DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atet and Abca14

DIOPT Version :9

Sequence 1:NP_001097079.1 Gene:Atet / 33636 FlyBaseID:FBgn0020762 Length:832 Species:Drosophila melanogaster
Sequence 2:XP_038957098.1 Gene:Abca14 / 365362 RGDID:1561491 Length:1691 Species:Rattus norvegicus


Alignment Length:897 Identity:175/897 - (19%)
Similarity:314/897 - (35%) Gaps:296/897 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SHLPQRPPVDI---EFCDISYSVTDSH-------RRGFKTILKSVSGKFRNGEITAIMGPSGAGK 189
            |.:...||.|.   |..|:...:...|       :......:|.:|.....|:||.::|.:||||
  Rat   509 SQVSDLPPSDFMEPEPVDLEAGIQIQHLYKEFTLKNSTLMAVKDLSLNLYEGQITVLLGHNGAGK 573

  Fly   190 STLMNILAG-YKTAQLSGSVLINSKE--RNLRRFRKLSCYIMQDDVLIANLTVREAMMVAANLKL 251
            :|.::||.| |...:  |.|.|:..:  .::.:.||......|||:|...|||.|.:.....:  
  Rat   574 TTTLSILTGLYLPTK--GKVYISGYDISSDMVQVRKSLGLCPQDDLLFPLLTVSEHLYFYCVI-- 634

  Fly   252 GKNMISYAKVVVVEEILETIGLKESVNTLTCNLSGGQRKRLSIALELVNNPPVMFFDEPTSGLDS 316
             |.:.|..:...:..:|.:.||.:..||::.:||||.:::|||.:.|:.:..|:..||||||:|.
  Rat   635 -KGISSTNRPREIHRMLTSFGLLQKSNTMSKDLSGGMKRKLSIIIALIGDTKVVILDEPTSGMDP 698

  Fly   317 STCFQLISLLRSLARGGRTIVCTIHQPSARLFEKFDHLYLLAQG--QC---------VY------ 364
            .:...:..||:...:....::.|.|...|.:..  |.:.:|..|  :|         :|      
  Rat   699 VSRRAIWDLLQHYKKDRTILLTTHHMDEADVLG--DRIAILVMGVLKCCGSSLFLKKLYGVGYHL 761

  Fly   365 ---------EGRVKGLVP-YL----------SSLGYECPSYH----------------------- 386
                     :|::..|:. |:          :.|.:..|..|                       
  Rat   762 VIVKTPDSDDGKISQLIKNYIPTAEMETNVAAELSFILPKEHTHRFAELFTDLEERQEELGISGF 826

  Fly   387 ---------------NPADYVL--EVA----------------------------SGEYGDAV-- 404
                           |.||..|  |:|                            ||.|.|:.  
  Rat   827 GVSMTTMDEVFFKVSNLADLKLNTEIAQSASTVNPSTSENNENMNVPRNFERSGYSGRYSDSSFN 891

  Fly   405 ---PKLVDAVKSGACKK--YAHKDYVLTLAQ----KGCNNDIIKGSG-SGAENAMAILTLE---- 455
               |..:...::...|:  ::.:::.|.|.|    :|....:|||.| |..:....::.||    
  Rat   892 AGWPLYMQQFRAMFIKRVMFSWRNWKLLLLQLLALQGLTYVLIKGIGFSVPKEPARVMDLEQYGE 956

  Fly   456 -------DEKPPLEDRQLEPSIPVDDPAELKPPKLETQQSQ---------NSDC-----SVVNMP 499
                   ...||| .::|..::.:    .||..|.:..:.|         |.||     ...::.
  Rat   957 TTVPFSVSGDPPL-TQKLTKNLEI----MLKDKKQKVHEVQGGVQDYLLTNKDCIYSCIVAFSLD 1016

  Fly   500 TNAVDDSCSFSSSKGTQNAVGGSGSGGPSAVVGCMTSLLDS--------HESVVTLPNKTGFP-- 554
            ....:.:.:|..:....:|       .|.::     |:||:        .::.:|:.||   |  
  Rat  1017 VTRKEKTFTFWFNNEAYHA-------SPLSL-----SILDNIIFKYLSGPDATITVSNK---PQP 1066

  Fly   555 ---TSGWTQFWILLKRSFRTILRDKMLTHMRLFSHVIVGAIIGMIYYDVG---NEASKIMSNAGC 613
               |.|.::     :||...|             .::...:.||..:..|   ...::.:|.|..
  Rat  1067 QPFTKGRSE-----ERSASGI-------------QIVFNLLFGMSIFTSGFCLMTVTERVSKAKH 1113

  Fly   614 IFFVS---------------LFTTFTAMMPTILTF-PTEMSVFVREHLNYWYS-LKAFYFAKTIA 661
            |.|||               |...|.|.:..:|.| .|::.:.: |:.|:..: |....|..:| 
  Rat  1114 IQFVSGVYTLNFWLSALLWDLIIHFVACVLLLLVFLYTDVHILL-ENYNFLDTMLILMLFGWSI- 1176

  Fly   662 DMPFQIVFSSVYVLVVYYLTSQPMELERVSMFVLICVLN------SLVAQSLGLLIGAGMNIETG 720
             :||      :|:|..:|..|       .:.::.|.|.|      |::..::..||.........
  Rat  1177 -IPF------IYLLSFWYNNS-------TNAYIKIFVFNHCLGFMSIIVDAVVELIPDIKTSTKN 1227

  Fly   721 VFLGPVTTIPTILFSGFFVNFDTIPGYLQWVTYVSYVRYGFEGAMVAIYGMDRAKMQCNQM---- 781
            :.|..:..:|.                           |.|..::...|.:...:..|:.:    
  Rat  1228 LILNSLLLLPI---------------------------YNFGMSIFKYYSIQEIRKLCSSLGSLN 1265

  Fly   782 ---YCHYRVPKKFLEEMSMDNALF--WVDAVALIGIFFALRIIAYFVLRWKL 828
               .|.:.     |...|||....  .|.|:|..|:.:.|.||......|.|
  Rat  1266 TFSGCQHE-----LTVYSMDKRAIGRHVTAMAATGLIYFLFIILLETTSWNL 1312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AtetNP_001097079.1 3a01204 137..825 CDD:273361 172/890 (19%)
ABCG_EPDR 142..366 CDD:213180 66/262 (25%)
ABC2_membrane 564..767 CDD:279410 39/228 (17%)
Abca14XP_038957098.1 rim_protein <100..1681 CDD:130324 175/897 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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