DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bdl and dcc

DIOPT Version :10

Sequence 1:NP_608822.1 Gene:bdl / 33635 FlyBaseID:FBgn0028482 Length:719 Species:Drosophila melanogaster
Sequence 2:XP_073806991.1 Gene:dcc / 569360 ZFINID:ZDB-GENE-011101-2 Length:1467 Species:Danio rerio


Alignment Length:662 Identity:164/662 - (24%)
Similarity:253/662 - (38%) Gaps:131/662 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 GSHVVFNCYIDFPFDAPIPYLVHWTKDNKKIFTWYEQETSTSELFNGRLHLVEN--HPEFGRASV 110
            |..:..:|  |...|..:| .:.|.||...:....::.  ..:|.||.| ||:|  |....|   
Zfish    49 GGVLQLDC--DALSDQGVP-SISWKKDGVLLSAVVDER--RRQLSNGSL-LVQNVMHSRHHR--- 104

  Fly   111 NLTAIRESDQGWYHCQVSFPNRSPSVRNNGTAYHLAVQGGSLIRIPPVNQTIREGQTAFFHCVMK 175
                   .|:|.|.|..|.......|....   .:.|.|...:.:...:.:...|.||...|.:.
Zfish   105 -------PDEGSYQCLASLEGIGAIVSRTA---RVTVSGPLRVLVSTESVSAHLGDTALLRCEVT 159

  Fly   176 HPENSQASWYKDGVLLQEVQDLVRRFYMGPDGSLSIDPTMMSDLGEYECKVRNSDGELQTAKAFL 240
            ........|.|:...|....|...|..:.|.|||.:......|...|.|...|.........|.|
Zfish   160 GDPMPVVRWQKNREDLPLTFDPDSRVVILPSGSLQVSRVQPPDSATYRCLAENPGSARTGTDADL 224

  Fly   241 NIQYKAKV------IYAPPEVFLPYGQPAVLDCHFRA--NPPLKNLRWEKDGLLFDS----YNVP 293
            .:..:..|      :..|.:|.:..|:.|||:|....  ||.   ..|.:...|..|    |:: 
Zfish   225 RVLPEPGVSRGLVFLQRPQKVSVLQGRDAVLECSASGFPNPA---FYWLRGNELIQSRSKKYSL- 285

  Fly   294 GVFYKMNGS-LFFAKVDENHAGSYTCTPYNDLGTDGPSPVISVIVLRPPIFSVTPKAIYIQKLGE 357
                 ::|| |..:.|.::.:|.|||..:|.......|..::|:|  ||.|...|...|..:..:
Zfish   286 -----LSGSNLLISSVTDDDSGIYTCIAHNKQQNISASCELAVLV--PPQFLNYPSNTYAYESSD 343

  Fly   358 AAELPCEAIDRDGNNRPSIIWGRKDGQPLPADRFSL-SGGNLTITGLVEGDRGIYECSATNEAAT 421
             .|:.|..   .||.:|.:.|.:.....:|:|.|.: .||:|.|.|||..|.|.|:|.|.|||..
Zfish   344 -IEMECAV---TGNPQPVVRWVKNGEVVVPSDYFQIVDGGHLQILGLVRSDEGFYQCIAENEAGN 404

  Fly   422 ITAEAELMI--ENIAPRAP------YNLTANSTETCITIR------------------------W 454
            ..|.|:|::  ....|.||      .:||.:|....:|.|                        |
Zfish   405 SQAMAQLILLQPEATPPAPPPEPSSSSLTYSSPPPSVTPRSAVSPSAPRDVAPVLVSSRFVRLSW 469

  Fly   455 QP-----GYLRPNLEYTVWYRLMEAPEWRTLRVLDKKVMEATVQHLQPGKEYEFMVLSQDKYGDG 514
            :|     |   |.|.|.|:|........|::.|.:.:.::.||.:|:|...|.|.||:.::.|.|
Zfish   470 RPPEEPRG---PILTYGVFYSEEGINRERSVNVTEAESLQLTVSNLRPEASYSFRVLAYNEQGPG 531

  Fly   515 MFSKQFRFQT-----LPSPIRADDFDAQQLQHDLGQVTAPAGGLGAPWNLTAISN--QQGWLLHW 572
            ..|:..|..|     :|.|:       :.||   .:..:|. .:.|.|:..|.:|  .|.:.|.|
Zfish   532 ESSEAIRLSTQAELLVPGPV-------ENLQ---AEAVSPT-SIQASWDPPAPANGPVQSYRLLW 585

  Fly   573 EHPVQGLEGLRLYAVRWWKEPEHFLIGHAETFDNYYQLRHLKEDTLFKVQVLAVGTETQQSVPSH 637
            .....|            ||....::|.:      |::..||:.|.:.::||||... ...|...
Zfish   586 TETSSG------------KEQNVEVVGQS------YRMEGLKKFTEYSLRVLAVNRH-GPGVSDK 631

  Fly   638 ELLI----DVPS 645
            :.||    ||||
Zfish   632 DTLITTLSDVPS 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bdlNP_608822.1 IG_like 42..128 CDD:214653 21/81 (26%)
Ig strand C 69..72 CDD:409512 0/2 (0%)
Ig strand E 108..112 CDD:409512 0/3 (0%)
Ig strand F 122..127 CDD:409512 2/4 (50%)
Ig 153..242 CDD:472250 19/88 (22%)
Ig strand B 168..172 CDD:409544 1/3 (33%)
Ig strand C 181..185 CDD:409544 0/3 (0%)
Ig strand E 207..211 CDD:409544 3/3 (100%)
Ig strand F 221..226 CDD:409544 2/4 (50%)
Ig strand G 235..238 CDD:409544 0/2 (0%)
Ig_3 247..322 CDD:464046 22/87 (25%)
Ig 341..428 CDD:472250 30/87 (34%)
Ig strand B 359..363 CDD:409353 1/3 (33%)
Ig strand C 375..380 CDD:409353 1/4 (25%)
Ig strand E 396..400 CDD:409353 2/3 (67%)
Ig strand F 410..415 CDD:409353 2/4 (50%)
Ig strand G 423..426 CDD:409353 1/2 (50%)
FN3 435..524 CDD:238020 30/123 (24%)
FN3 554..636 CDD:238020 20/83 (24%)
dccXP_073806991.1 None

Return to query results.
Submit another query.