DRSC/TRiP Functional Genomics Resources

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Protein Alignment bdl and Nrcam

DIOPT Version :9

Sequence 1:NP_608822.1 Gene:bdl / 33635 FlyBaseID:FBgn0028482 Length:719 Species:Drosophila melanogaster
Sequence 2:XP_017449758.1 Gene:Nrcam / 497815 RGDID:3209 Length:1315 Species:Rattus norvegicus


Alignment Length:659 Identity:148/659 - (22%)
Similarity:251/659 - (38%) Gaps:159/659 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 PIPYLVHWTKDNKKI---FTWYEQETSTSELFNGRLHLVENHPEFGRASVNLTAIRESDQGWYHC 125
            |.| :::|.|::..:   .|:|.....|.::.:                     :.|:|.|.|.|
  Rat   302 PTP-VIYWIKEDGTLPVNRTFYRNFKKTLQIIH---------------------VSEADSGNYQC 344

  Fly   126 QVSFPNRSPSVRNN--GTAYH---LAVQGGSLIRIPPVNQTIREGQTAFFHCVMKHPENSQASWY 185
                      :..|  |..:|   :.|:......:.|.|..:..|:.....|........:.||.
  Rat   345 ----------IAKNALGAVHHTISVTVK
AAPYWIVAPHNLVLSPGENGTLICRANGNPKPRISWL 399

  Fly   186 KDGVLLQEVQDLVRRFYMGPDGSLSIDPTMMSDLGE-----YECKVRNSDGELQTAKAFLNIQYK 245
            .:||.::...|       .|...:..|..|.|::.|     |:|...|..|.| .|.||:|    
  Rat   400 TNGVPVEIALD-------DPSRKIDGDTIMFSNVQESSSAVYQCNASNKYGYL-LANAFVN---- 452

  Fly   246 AKVIYAPPEVF--------LPYGQPAVLDCHFRANPPLKNLRWEK----DGLLFDSYNVPGVFYK 298
              |:..||.:.        :...:||:|||.|..: |:..:.|.|    ..|..|.|    |.:.
  Rat   453 --VLAEPPRILTSANTLYQVIANRPALLDCAFFGS-PMPTIEWFKGTKGSALHEDIY----VLHD 510

  Fly   299 MNGSLFFAKVDENHAGSYTCTPYNDLGTDGPSPVISVIVLRPPIFSVTPKAIYIQKLGEAAELPC 363
             ||:|......::..|:|||...|.||.  ....:.:.:..|..|...|:...:|: |......|
  Rat   511 -NGTLEIPVAQKDSTGTYTCVARNKLGM--AKNEVHLEIKDPTRFIKQPEYAVVQR-GSKVSFEC 571

  Fly   364 EAIDRDGNNRPSIIWGRKDGQPLPAD-RFSLSGGNLTITGLVEGDRGIYECSATNEAATITAEAE 427
            : :..|....|:|:| .||...||.| |||:...:|.::.:.:.|.|.|.|:|.....:::|.|.
  Rat   572 K-VKHDHTLIPTILW-LKDNGELPNDERFSVDKDHLVVSDVKDEDGGTYTCAANTTLDSVSASAV 634

  Fly   428 LMIENIA-----------PRAPYNL-TANSTETCITIRWQPG--YLRPNLEYTVWYR--LMEAPE 476
            |.:  :|           |..|::| ..|..:..:.:.|.||  ...|..::.:.|.  :.||..
  Rat   635 LRV--VAPTPTPAPIYDVPNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHEAGL 697

  Fly   477 WRTLRVLDKKVMEATVQ-HLQPGKEYEFMVLSQDKYGDGMFSKQFRFQTLPSPIRADDFDAQQLQ 540
            ||  ...:....:.|.| .|.|...|.|.|::::..|          :::||. .::.:..:..:
  Rat   698 WR--HQAEVSGTQTTAQLKLSPYVNYSFRVMAENSIG----------RSVPSE-ASEQYLTKAAE 749

  Fly   541 HDLGQVTAPAGGLGA-PWNLTAISNQQGWLLHWEHPVQGLE----GLRLYAVRW--------W-- 590
            .|  |......|||. |.||         ::.|: |:.|.:    ||: |.|.|        |  
  Rat   750 PD--QNPTAVEGLGTEPDNL---------VITWK-PLNGFQSNGPGLQ-YKVSWRQKDGDDEWTS 801

  Fly   591 ---KEPEHFLIGHAETFDNYYQLRHLKEDTLFKVQVL-AVGTETQQSVPSHELLIDVP--SQRKV 649
               .....:::....||..|          |.|||.| .||...:.:........|:|  :...|
  Rat   802 VVVANVSKYIVSGTPTFVPY----------LIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNV 856

  Fly   650 RALIIGSSV 658
            |..::.|::
  Rat   857 RVSVVNSTL 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bdlNP_608822.1 IG_like 42..128 CDD:214653 12/66 (18%)
Ig 43..131 CDD:299845 12/69 (17%)
I-set 153..242 CDD:254352 22/93 (24%)
Ig 157..242 CDD:299845 22/89 (25%)
Ig_2 252..337 CDD:290606 25/96 (26%)
IG_like 260..327 CDD:214653 23/70 (33%)
I-set 341..428 CDD:254352 25/87 (29%)
IGc2 356..419 CDD:197706 20/63 (32%)
FN3 435..524 CDD:238020 21/94 (22%)
FN3 554..636 CDD:238020 23/100 (23%)
NrcamXP_017449758.1 IgI_NrCAM 50..144 CDD:409458
Ig strand B 68..72 CDD:409458
Ig strand C 81..85 CDD:409458
Ig strand E 106..110 CDD:409458
Ig strand F 124..129 CDD:409458
Ig strand G 138..141 CDD:409458
Ig 153..242 CDD:416386
Ig strand A 153..156 CDD:409353
Ig strand A' 158..162 CDD:409353
Ig strand B 165..173 CDD:409353
Ig strand C 180..186 CDD:409353
Ig strand C' 189..192 CDD:409353
Ig strand D 198..202 CDD:409353
Ig strand E 204..208 CDD:409353
Ig strand F 219..227 CDD:409353
Ig strand G 230..242 CDD:409353
Ig 281..362 CDD:416386 15/91 (16%)
Ig strand B 292..296 CDD:409353
Ig strand C 305..309 CDD:409353 0/3 (0%)
Ig strand E 327..331 CDD:409353 1/3 (33%)
Ig strand F 341..346 CDD:409353 2/14 (14%)
Ig strand G 354..357 CDD:409353 1/2 (50%)
Ig 366..454 CDD:416386 23/101 (23%)
Ig strand B 382..386 CDD:409353 0/3 (0%)
Ig strand C 395..399 CDD:409353 1/3 (33%)
Ig strand E 419..423 CDD:409353 1/3 (33%)
Ig strand F 433..438 CDD:409353 2/4 (50%)
Ig strand G 446..449 CDD:409353 1/2 (50%)
Ig 460..546 CDD:416386 23/93 (25%)
Ig strand A 460..463 CDD:409353 0/2 (0%)
Ig strand A' 467..470 CDD:409353 0/2 (0%)
Ig strand B 476..483 CDD:409353 4/6 (67%)
Ig strand C 489..494 CDD:409353 1/4 (25%)
Ig strand C' 496..498 CDD:409353 0/1 (0%)
Ig strand D 505..509 CDD:409353 2/7 (29%)
Ig strand E 512..517 CDD:409353 2/4 (50%)
Ig strand F 525..533 CDD:409353 4/7 (57%)
Ig strand G 536..546 CDD:409353 1/11 (9%)
Ig 553..637 CDD:416386 25/86 (29%)
Ig strand A 553..556 CDD:409353 0/2 (0%)
Ig strand A' 558..562 CDD:409353 0/3 (0%)
Ig strand B 565..574 CDD:409353 1/9 (11%)
Ig strand C 582..587 CDD:409353 2/5 (40%)
Ig strand C' 590..593 CDD:409353 0/2 (0%)
Ig strand D 597..602 CDD:409353 3/4 (75%)
Ig strand E 603..609 CDD:409353 1/5 (20%)
Ig strand F 616..624 CDD:409353 4/7 (57%)
Ig strand G 627..637 CDD:409353 3/9 (33%)
FN3 651..741 CDD:238020 23/102 (23%)
fn3 754..836 CDD:394996 25/102 (25%)
fn3 852..944 CDD:394996 3/14 (21%)
fn3 957..1041 CDD:394996
fn3 1075..1143 CDD:394996
Bravo_FIGEY 1198..1287 CDD:404722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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