DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bdl and Dscam3

DIOPT Version :9

Sequence 1:NP_608822.1 Gene:bdl / 33635 FlyBaseID:FBgn0028482 Length:719 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:678 Identity:146/678 - (21%)
Similarity:239/678 - (35%) Gaps:188/678 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GSALLALLAIILLMNISCTSAAR------DHRRQTNLEAKVGSHVVFNCYIDFPFDAPIPYLVHW 71
            |:.|||:||..||    .||..|      :...:.......|:.|....:     .:| |.||.|
  Fly    18 GALLLAVLATPLL----ATSGLRVPTFLLEPAPRLLFGNDTGAQVTCTAH-----GSP-PPLVTW 72

  Fly    72 TKDNKKIFTWYEQETSTSELFNGRLHLVENHPEFGRASVNLTAIRESDQGWYHCQVSFPNRSPSV 136
            ...:..:.|........|.  ||.||......::.|..|:        :..|.|:.|  |.:.:|
  Fly    73 VLRDGSLATQVPGLRKISG--NGTLHFPPFLAQYYRTDVH--------EATYRCRAS--NEAGTV 125

  Fly   137 RNNGTAYHLAVQGGSLIRIPPVNQTIREGQTAFFHCVMK---HPENSQASWYK-DGVLLQEVQDL 197
            .:.....|..|:....:.:.  |..:..|.:|...|.:.   .|....|||:: :.:||.::.|:
  Fly   126 LSRNVQVHAVVRRQFHVHVE--NTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDV 188

  Fly   198 VRRF-YMGPDGSLSIDPTMMSD-LGEYECKVRNS-DGELQTAKA-FLNIQYKAKVIYAP------ 252
            ..|: .:...|.|.:......| |.::.|.|.|: :||.|.:.| .|.::..:|.: ||      
  Fly   189 AGRYVVLAASGDLYVRSVRSEDGLMKFSCLVTNTLNGERQRSDAVMLQVKELSKNL-APRTTQKP 252

  Fly   253 -PEVFLPYGQPAVLDCHFRANP-PLKNLRWEKDGLLFDSYNV--PGVFYKMNGS---------LF 304
             .|:.:..|....|.|:.:.|| |           :|..|.|  ....|.:..|         |.
  Fly   253 VMEIHVERGNDVHLPCNIQGNPFP-----------IFTWYRVSDSAALYPIPSSQRVILSRTLLL 306

  Fly   305 FAKVDENHAGSYTCTPYNDLGTD------GPSPVISVIVLRPPIFSVTPKAIYIQKLGEAAELPC 363
            ....||..||.:.|...|..|..      ..:..:||.:|        |: :.|...|..|...|
  Fly   307 IKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSVHIL--------PQ-VQIVNSGGTANFNC 362

  Fly   364 ----EAIDRDGNNRPSIIWGRKDGQPLPAD----------RFSLSGGNLTITGLVEGDRGIYECS 414
                .|||       :|.| ..:|:||.|:          || ||..:|.:..:...|||:|:|.
  Fly   363 TTTGSAID-------AIDW-LHNGKPLQANNALTTGRDNIRF-LSKSSLLVQNVGRRDRGVYQCL 418

  Fly   415 ATNEAATITAEAELMIENIAPRAPYNLTANSTETCITIRWQPGYLRPNLEYTVWYRLMEAPEWRT 479
            ..|:.|:..|.|||.:.:..|...|.....:             :||....::......:|..:.
  Fly   419 VENQRASAQAMAELKLGDTVPELIYTFIEQN-------------VRPGPLISLKCSASGSPPPQF 470

  Fly   480 LRVLDKK-VMEATVQHLQPGKEYEFMVLSQDKYGDGMFSKQFRFQTLPSPIRADDFDAQQLQH-D 542
            ..:||.: :|:.::.|               ::..|.|.               |.....:.| :
  Fly   471 AWLLDSQPIMDVSLHH---------------RFAIGQFV---------------DMSGDVISHLN 505

  Fly   543 LGQVTAPAGGLGAPWNLTAISNQQGWLLHWEH-------------PVQGLEGLRLYA-------- 586
            :..|....|||   :...| ||..|.:.|...             |::.:.|..:..        
  Fly   506 ISHVRPDDGGL---YKCVA-SNSMGSVQHSARLNVYGPPYVRAIGPIKAVAGEDIIVHCPFAGYP 566

  Fly   587 ---VRWWKEPEHFLIGHAE-TFDNYYQL 610
               :||.|       .|.| |..|:|:|
  Fly   567 VEQIRWEK-------AHQELTTSNHYEL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bdlNP_608822.1 IG_like 42..128 CDD:214653 17/85 (20%)
Ig 43..131 CDD:299845 18/87 (21%)
I-set 153..242 CDD:254352 24/96 (25%)
Ig 157..242 CDD:299845 24/92 (26%)
Ig_2 252..337 CDD:290606 23/109 (21%)
IG_like 260..327 CDD:214653 19/78 (24%)
I-set 341..428 CDD:254352 28/100 (28%)
IGc2 356..419 CDD:197706 23/76 (30%)
FN3 435..524 CDD:238020 11/89 (12%)
FN3 554..636 CDD:238020 16/82 (20%)
Dscam3NP_996226.2 IG 56..133 CDD:214652 19/94 (20%)
Ig 56..125 CDD:143165 18/86 (21%)
I-set 246..337 CDD:254352 21/101 (21%)
Ig 264..334 CDD:143165 18/80 (23%)
I-set 345..433 CDD:254352 30/105 (29%)
Ig 358..431 CDD:143165 24/81 (30%)
Ig 456..533 CDD:143165 18/110 (16%)
IGc2 553..619 CDD:197706 10/42 (24%)
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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