DRSC/TRiP Functional Genomics Resources

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Protein Alignment bdl and Lsamp

DIOPT Version :9

Sequence 1:NP_608822.1 Gene:bdl / 33635 FlyBaseID:FBgn0028482 Length:719 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:387 Identity:90/387 - (23%)
Similarity:151/387 - (39%) Gaps:69/387 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LFNGRLHLVENHPEFGRASVNLTAIRESDQGWYHCQVSFPNRSPSVRNNGTAYHLAVQGGSLIRI 155
            ||:.::....|.|.   |.|||:.|...         ..|.||... |.||.             
  Rat    18 LFSLQVLAFWNQPP---AEVNLSPITIP---------GLPVRSVDF-NRGTD------------- 56

  Fly   156 PPVNQTIREGQTAFFHCVMKHPENSQASWY-KDGVL--------LQEVQDLVRRFYMGPDGSLSI 211
               |.|:|:|.||...||:: .:||:.:|. :.|::        |....:|.:|..:  :.||.|
  Rat    57 ---NITVRQGDTAILRCVVE-DKNSKVAWLNRSGIIFAGHDKWSLDPRVELEKRHAL--EYSLRI 115

  Fly   212 DPTMMSDLGEYECKVRNSDGELQTAKAFLNIQYKAKVIYAPPEVFLPYGQPAVLDCHFRANP-PL 275
            ....:.|.|.|.|.|: :..|.:|::.:|.:|...|:.....:|.:..|....|.|.....| |:
  Rat   116 QKVDVYDEGSYTCSVQ-TQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRPEPV 179

  Fly   276 KNLRWEKDGLLFDSYNVPGVFYKMNGSLFFAKVDENHAGSYTCTPYNDLGTDGPSPVISVIVLRP 340
              :.|.....|...:.....:.::.|      :....:|.|.|...|::.:.....| .|.|..|
  Rat   180 --ITWRHLTPLGREFEGEEEYLEILG------ITREQSGKYECKAANEVSSADVKQV-KVTVNYP 235

  Fly   341 PIFSVTPKAIYIQKLGEAAELPCEAIDRDGNNRPSIIWGRKDGQPLPADRFSLSG----GNLTIT 401
            |  ::|.........|..|.|.|||   .....|...|.|.|.:...|:...:..    .:||:|
  Rat   236 P--TITESKSNEATTGRQASLKCEA---SAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVT 295

  Fly   402 GLVEGDRGIYECSATNEAATITAEAELMIENIAPRAPYNLTANSTETCITIRWQ---PGYLR 460
            .:.|...|.|.|.|.|:.. :|..:.::.:.:.|..|:.:....|    |:.::   ||.:|
  Rat   296 NVTEEHYGNYTCVAANKLG-VTNASLVLFKRVLPTVPHPIQEIGT----TVHFKQKGPGSVR 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bdlNP_608822.1 IG_like 42..128 CDD:214653 9/36 (25%)
Ig 43..131 CDD:299845 9/39 (23%)
I-set 153..242 CDD:254352 26/97 (27%)
Ig 157..242 CDD:299845 26/93 (28%)
Ig_2 252..337 CDD:290606 15/85 (18%)
IG_like 260..327 CDD:214653 12/67 (18%)
I-set 341..428 CDD:254352 23/90 (26%)
IGc2 356..419 CDD:197706 20/66 (30%)
FN3 435..524 CDD:238020 7/29 (24%)
FN3 554..636 CDD:238020
LsampXP_038944182.1 Ig 55..145 CDD:416386 27/109 (25%)
FR1 55..71 CDD:409353 7/31 (23%)
Ig strand A' 56..62 CDD:409353 2/21 (10%)
Ig strand B 64..72 CDD:409353 3/7 (43%)
CDR1 72..76 CDD:409353 0/4 (0%)
FR2 77..84 CDD:409353 2/6 (33%)
Ig strand C 77..83 CDD:409353 2/5 (40%)
CDR2 85..95 CDD:409353 1/9 (11%)
Ig strand C' 87..90 CDD:409353 0/2 (0%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 10/36 (28%)
Ig strand D 100..107 CDD:409353 1/6 (17%)
Ig strand E 110..116 CDD:409353 2/5 (40%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 0/3 (0%)
Ig strand G 136..145 CDD:409353 2/8 (25%)
FR4 138..145 CDD:409353 2/6 (33%)
Ig_3 148..218 CDD:404760 13/77 (17%)
Ig strand A' 155..160 CDD:409353 1/4 (25%)
Ig strand B 166..173 CDD:409353 2/6 (33%)
Ig strand C 179..184 CDD:409353 1/6 (17%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 0/5 (0%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 2/8 (25%)
Ig_3 235..311 CDD:404760 22/80 (28%)
Ig strand B 252..256 CDD:409353 2/3 (67%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 1/3 (33%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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