DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and DSK2

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_014003.1 Gene:DSK2 / 855319 SGDID:S000004889 Length:373 Species:Saccharomyces cerevisiae


Alignment Length:56 Identity:23/56 - (41%)
Similarity:33/56 - (58%) Gaps:0/56 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
            :.|.|..|:...|..|....|||...||||::||.|:|.:|:..|:||...::|||
Yeast    16 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 23/56 (41%)
Ribosomal_L40e 79..126 CDD:395807
DSK2NP_014003.1 Ubl_Dsk2p_like 3..74 CDD:340523 23/56 (41%)
STI1 149..185 CDD:128966
UBA_Dsk2p_like 328..369 CDD:270509
Blue background indicates that the domain is not in the aligned region.

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