DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and AT1G53930

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_175796.1 Gene:AT1G53930 / 841831 AraportID:AT1G53930 Length:158 Species:Arabidopsis thaliana


Alignment Length:73 Identity:55/73 - (75%)
Similarity:62/73 - (84%) Gaps:0/73 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.||:|||||:.|.||||..|||||:|||||||:|||.|||||||.|||||||.||:|||||.:|
plant    86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDS 150

  Fly    66 TLHLVLRL 73
            .|||:.||
plant   151 ILHLIKRL 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 55/73 (75%)
Ribosomal_L40e 79..126 CDD:395807
AT1G53930NP_175796.1 Ubl1_cv_Nsp3_N-like 86..158 CDD:475130 53/71 (75%)
Blue background indicates that the domain is not in the aligned region.

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