DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and RUB3

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_172662.1 Gene:RUB3 / 837750 AraportID:AT1G11980 Length:78 Species:Arabidopsis thaliana


Alignment Length:76 Identity:43/76 - (56%)
Similarity:57/76 - (75%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |:|.|||||.|.|.:|:|.:||||.:|.:|::||||||..||:::.||||.|..|...||:::.|
plant     1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGS 65

  Fly    66 TLHLVLRLRGG 76
            .|||||.||||
plant    66 VLHLVLALRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 41/74 (55%)
Ribosomal_L40e 79..126 CDD:395807
RUB3NP_172662.1 Ubl_NEDD8 3..76 CDD:340504 40/72 (56%)
Blue background indicates that the domain is not in the aligned region.

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