DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and UBQ9

DIOPT Version :9

Sequence 1:NP_001260018.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_568552.1 Gene:UBQ9 / 833742 AraportID:AT5G37640 Length:322 Species:Arabidopsis thaliana


Alignment Length:88 Identity:74/88 - (84%)
Similarity:82/88 - (93%) Gaps:1/88 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:|||||||||||:||||||||||||||:|||||:||||||||
plant    79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQKES 143

  Fly    66 TLHLVLRLRGGIIEPSLRILAQK 88
            ||||||||||| ::..:|.|.:|
plant   144 TLHLVLRLRGG-MQIFVRTLTRK 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_001260018.1 Ubl_ubiquitin 1..76 CDD:340501 69/74 (93%)
Ribosomal_L40e 79..126 CDD:395807 3/10 (30%)
UBQ9NP_568552.1 UBQ 3..78 CDD:294102
UBQ 3..74 CDD:214563
Ubiquitin 79..154 CDD:176398 69/74 (93%)
UBQ 79..150 CDD:214563 65/70 (93%)
Ubiquitin 155..230 CDD:176398 3/11 (27%)
UBQ 155..226 CDD:214563 3/11 (27%)
UBQ 231..307 CDD:294102
UBQ 231..303 CDD:214563
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 138 1.000 Domainoid score I1562
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1536766at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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