DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL40 and UBQ11

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_567286.1 Gene:UBQ11 / 825847 AraportID:AT4G05050 Length:229 Species:Arabidopsis thaliana


Alignment Length:77 Identity:73/77 - (94%)
Similarity:76/77 - (98%) Gaps:0/77 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:||||||||||||||||||||||||||||||||:||||||||
plant     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65

  Fly    66 TLHLVLRLRGGI 77
            |||||||||||:
plant    66 TLHLVLRLRGGM 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_L40e 79..126 CDD:395807
UBQ11NP_567286.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ubl_ubiquitin 77..152 CDD:340501 0/1 (0%)
Ubl_ubiquitin 153..228 CDD:340501
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.