DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and UBQ7

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_565812.1 Gene:UBQ7 / 818132 AraportID:AT2G35635 Length:154 Species:Arabidopsis thaliana


Alignment Length:76 Identity:73/76 - (96%)
Similarity:75/76 - (98%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:||||||||||||||||||||||||||||||||:||||||||
plant     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65

  Fly    66 TLHLVLRLRGG 76
            |||||||||||
plant    66 TLHLVLRLRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_L40e 79..126 CDD:395807
UBQ7NP_565812.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ubl_NEDD8 79..152 CDD:340504
Blue background indicates that the domain is not in the aligned region.

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