DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and UBA52

DIOPT Version :9

Sequence 1:NP_001260018.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:XP_016882687.1 Gene:UBA52 / 7311 HGNCID:12458 Length:203 Species:Homo sapiens


Alignment Length:156 Identity:125/156 - (80%)
Similarity:126/156 - (80%) Gaps:28/156 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Human    48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 112

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMICRK----------------------------CYAR 102
            ||||||||||||||||||.||||||||||||||                            ||||
Human   113 TLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPPLLSLCRCYAR 177

  Fly   103 LHPRATNCRKKKCGHTNNLRPKKKLK 128
            |||||.||||||||||||||||||:|
Human   178 LHPRAVNCRKKKCGHTNNLRPKKKVK 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_001260018.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 44/74 (59%)
UBA52XP_016882687.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158282
Domainoid 1 1.000 143 1.000 Domainoid score I4649
eggNOG 1 0.900 - - E1_COG1552
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68307
Inparanoid 1 1.050 257 1.000 Inparanoid score I3165
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53637
OrthoDB 1 1.010 - - D1536766at2759
OrthoFinder 1 1.000 - - FOG0003235
OrthoInspector 1 1.000 - - oto90957
orthoMCL 1 0.900 - - OOG6_101560
Panther 1 1.100 - - LDO PTHR10666
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1137
SonicParanoid 1 1.000 - - X2190
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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