DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and rps27a

DIOPT Version :9

Sequence 1:NP_001260018.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001016172.1 Gene:rps27a / 548926 XenbaseID:XB-GENE-5741151 Length:156 Species:Xenopus tropicalis


Alignment Length:130 Identity:87/130 - (66%)
Similarity:90/130 - (69%) Gaps:33/130 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHT--NNLRPKKKLK 128
            |||||||||||         |:|                      ||||...|  .|...:||:|
 Frog    66 TLHLVLRLRGG---------AKK----------------------RKKKSYTTPKKNKHKRKKVK 99

  Fly   129  128
             Frog   100  99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_001260018.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 8/48 (17%)
rps27aNP_001016172.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_S27 103..147 CDD:396259
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 143 1.000 Domainoid score I4605
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1536766at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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