DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and ubc

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001006688.1 Gene:ubc / 448120 XenbaseID:XB-GENE-6066017 Length:609 Species:Xenopus tropicalis


Alignment Length:96 Identity:79/96 - (82%)
Similarity:81/96 - (84%) Gaps:15/96 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGI---------------IEPS 81
            |||||||||||:               :|||
 Frog    66 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 3/3 (100%)
ubcNP_001006688.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ubl_ubiquitin 77..152 CDD:340501 3/20 (15%)
Ubl_ubiquitin 153..228 CDD:340501
Ubl_ubiquitin 229..304 CDD:340501
Ubl_ubiquitin 305..380 CDD:340501
Ubl_ubiquitin 381..456 CDD:340501
Ubl_ubiquitin 457..532 CDD:340501
Ubl_ubiquitin 533..608 CDD:340501
Blue background indicates that the domain is not in the aligned region.

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