DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and nedd8l

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001002557.1 Gene:nedd8l / 436830 ZFINID:ZDB-GENE-040718-295 Length:80 Species:Danio rerio


Alignment Length:76 Identity:45/76 - (59%)
Similarity:60/76 - (78%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.|.|||||||.|.:::||:|.:|.:|.::::||||||.|||||::|||:.|.:|.:||.||..|
Zfish     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIQGGS 65

  Fly    66 TLHLVLRLRGG 76
            .|||||.||||
Zfish    66 VLHLVLALRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 43/74 (58%)
Ribosomal_L40e 79..126 CDD:395807
nedd8lNP_001002557.1 Ubl_NEDD8 3..76 CDD:340504 42/72 (58%)
Blue background indicates that the domain is not in the aligned region.

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