DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and zgc:56596

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_956594.1 Gene:zgc:56596 / 393270 ZFINID:ZDB-GENE-040426-1089 Length:157 Species:Danio rerio


Alignment Length:75 Identity:30/75 - (40%)
Similarity:45/75 - (60%) Gaps:0/75 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.:.||.|.||...::|..::.:..||..:.::..||..||||::.||.|.|...||||:|..|:
Zfish     1 MILTVKPLQGKECNVQVTENEKVSTVKELVSERLNIPASQQRLLYKGKALADEHRLSDYSIGPEA 65

  Fly    66 TLHLVLRLRG 75
            .|:||:|..|
Zfish    66 KLNLVVRPAG 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 30/75 (40%)
Ribosomal_L40e 79..126 CDD:395807
zgc:56596NP_956594.1 Ubl_UBL4A_like 1..72 CDD:340505 28/70 (40%)
Tugs 97..143 CDD:465528
Blue background indicates that the domain is not in the aligned region.

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