DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and CG7215

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_650680.1 Gene:CG7215 / 3772662 FlyBaseID:FBgn0038571 Length:130 Species:Drosophila melanogaster


Alignment Length:113 Identity:40/113 - (35%)
Similarity:62/113 - (54%) Gaps:18/113 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKE 64
            |||.:|.|.||..|:||.|:.||..||.:|:.:..|....|:|:..|:.|.:.:|::.| ||::.
  Fly     1 MQITIKVLKGKDCTIEVAPTSTILEVKHQIEAELQISATNQKLLLLGRPLNNEQTIASYPNIKEG 65

  Fly    65 STLHLVLRLRGGIIEPSLRILAQKYNCDKMI--CRKCYAR-LHPRATN 109
            :.|:||      :|:|.||        |.::  .||.|:. |..|.||
  Fly    66 TKLNLV------VIKPCLR--------DSILRGFRKHYSEPLAERMTN 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 28/75 (37%)
Ribosomal_L40e 79..126 CDD:395807 11/34 (32%)
CG7215NP_650680.1 Ubl1_cv_Nsp3_N-like 1..72 CDD:475130 28/76 (37%)
Tugs 87..121 CDD:465528 6/13 (46%)

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