DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and rps27a

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_956796.1 Gene:rps27a / 337810 ZFINID:ZDB-GENE-030131-10018 Length:156 Species:Danio rerio


Alignment Length:130 Identity:87/130 - (66%)
Similarity:90/130 - (69%) Gaps:33/130 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHT--NNLRPKKKLK 128
            |||||||||||         |:|                      ||||...|  .|...:||:|
Zfish    66 TLHLVLRLRGG---------AKK----------------------RKKKSYTTPKKNKHKRKKVK 99

  Fly   129  128
            Zfish   100  99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 8/48 (17%)
rps27aNP_956796.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_S27 103..147 CDD:460261
Blue background indicates that the domain is not in the aligned region.

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