DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and Nedd8

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_620233.1 Gene:Nedd8 / 25490 RGDID:3158 Length:81 Species:Rattus norvegicus


Alignment Length:76 Identity:44/76 - (57%)
Similarity:59/76 - (77%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.|.|||||||.|.:::||:|.:|.:|.::::||||||.|||||::|||:.|.:|.:||.|...|
  Rat     1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGS 65

  Fly    66 TLHLVLRLRGG 76
            .|||||.||||
  Rat    66 VLHLVLALRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 42/74 (57%)
Ribosomal_L40e 79..126 CDD:395807
Nedd8NP_620233.1 Ubl_NEDD8 3..76 CDD:340504 41/72 (57%)
Interaction with UBE1C. /evidence=ECO:0000250|UniProtKB:Q15843 70..72 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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