DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and ubi4

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_595409.1 Gene:ubi4 / 2541030 PomBaseID:SPBC337.08C Length:382 Species:Schizosaccharomyces pombe


Alignment Length:77 Identity:73/77 - (94%)
Similarity:76/77 - (98%) Gaps:0/77 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||:|||:|||||||||||||||||||||||||||||||||||||
pombe   305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 369

  Fly    66 TLHLVLRLRGGI 77
            |||||||||||:
pombe   370 TLHLVLRLRGGL 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 71/74 (96%)
Ribosomal_L40e 79..126 CDD:395807
ubi4NP_595409.1 Ubl_ubiquitin 1..76 CDD:340501
Ubl_ubiquitin 77..152 CDD:340501
Ubl_ubiquitin 153..228 CDD:340501
Ubl_ubiquitin 229..304 CDD:340501
Ubl_ubiquitin 305..380 CDD:340501 71/74 (96%)
Blue background indicates that the domain is not in the aligned region.

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