DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and Uba52

DIOPT Version :9

Sequence 1:NP_001260018.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001335156.1 Gene:Uba52 / 22186 MGIID:98887 Length:128 Species:Mus musculus


Alignment Length:128 Identity:125/128 - (97%)
Similarity:126/128 - (98%) Gaps:0/128 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 128
            ||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||:|
Mouse    66 TLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_001260018.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 44/46 (96%)
Uba52NP_001335156.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 44/46 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848678
Domainoid 1 1.000 143 1.000 Domainoid score I4620
eggNOG 1 0.900 - - E1_COG1552
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 256 1.000 Inparanoid score I3146
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53637
OrthoDB 1 1.010 - - D1536766at2759
OrthoFinder 1 1.000 - - FOG0003235
OrthoInspector 1 1.000 - - oto94541
orthoMCL 1 0.900 - - OOG6_101560
Panther 1 1.100 - - LDO PTHR10666
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1137
SonicParanoid 1 1.000 - - X2190
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.840

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