DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and Ubb

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_620250.3 Gene:Ubb / 192255 RGDID:621562 Length:305 Species:Rattus norvegicus


Alignment Length:96 Identity:79/96 - (82%)
Similarity:81/96 - (84%) Gaps:15/96 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGI---------------IEPS 81
            |||||||||||:               :|||
  Rat    66 TLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ribosomal_L40e 79..126 CDD:395807 3/3 (100%)
UbbNP_620250.3 Ubl_ubiquitin 1..76 CDD:340501 74/74 (100%)
Ubl_ubiquitin 77..152 CDD:340501 3/20 (15%)
Ubl_ubiquitin 153..228 CDD:340501
Ubl_ubiquitin 229..304 CDD:340501
Blue background indicates that the domain is not in the aligned region.

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