DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and ubq-1

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_741157.1 Gene:ubq-1 / 175840 WormBaseID:WBGene00006727 Length:838 Species:Caenorhabditis elegans


Alignment Length:77 Identity:75/77 - (97%)
Similarity:76/77 - (98%) Gaps:0/77 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
 Worm     1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65

  Fly    66 TLHLVLRLRGGI 77
            |||||||||||:
 Worm    66 TLHLVLRLRGGM 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 73/74 (99%)
Ribosomal_L40e 79..126 CDD:395807
ubq-1NP_741157.1 Ubl_ubiquitin 1..76 CDD:340501 73/74 (99%)
Ubl_ubiquitin 77..152 CDD:340501 0/1 (0%)
Ubl_ubiquitin 153..228 CDD:340501
Ubl_ubiquitin 229..304 CDD:340501
Ubl_ubiquitin 305..380 CDD:340501
Ubl_ubiquitin 381..456 CDD:340501
Ubl_ubiquitin 457..532 CDD:340501
Ubl_ubiquitin 533..608 CDD:340501
Ubl_ubiquitin 609..684 CDD:340501
Ubl_ubiquitin 685..760 CDD:340501
Ubl_ubiquitin 761..836 CDD:340501
Blue background indicates that the domain is not in the aligned region.

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