DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and ned-8

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001379170.1 Gene:ned-8 / 172910 WormBaseID:WBGene00003587 Length:77 Species:Caenorhabditis elegans


Alignment Length:76 Identity:47/76 - (61%)
Similarity:59/76 - (77%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            |.|.|||||||.|.|::||:|.:|.:|.|:::||||||.||||||||||:.|.:|.:||.:...|
 Worm     1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGS 65

  Fly    66 TLHLVLRLRGG 76
            .|||||.||||
 Worm    66 VLHLVLALRGG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 45/74 (61%)
Ribosomal_L40e 79..126 CDD:395807
ned-8NP_001379170.1 Ubl_NEDD8 3..76 CDD:340504 44/72 (61%)
Blue background indicates that the domain is not in the aligned region.

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