DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and LOC1281153

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:XP_321092.3 Gene:LOC1281153 / 1281153 VectorBaseID:AGAMI1_010060 Length:309 Species:Anopheles gambiae


Alignment Length:128 Identity:62/128 - (48%)
Similarity:82/128 - (64%) Gaps:13/128 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||||||.||||||.::.||..|:|:||.:|.::|.|||:|||:|||||||||||.|.:|:|.|.|
Mosquito     1 MQIFVKMLTGKTIAVDTEPEATVESVKKQIDEREEIPPNQQRMIFAGKQLEDGRQLQEYSIIKGS 65

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYA-RLHPRAT-NCRKKKCGHTNNLRPKKK 126
            |:||||||:||     ::|..      ||:..|..| ...|.|| ...||:......:.|.::
Mosquito    66 TIHLVLRLKGG-----MQIFV------KMLTGKTIAVDTEPEATVESVKKQIDEREEIPPNQQ 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 49/74 (66%)
Ribosomal_L40e 79..126 CDD:395807 11/48 (23%)
LOC1281153XP_321092.3 Ubl1_cv_Nsp3_N-like 1..76 CDD:475130 49/74 (66%)
Ubl1_cv_Nsp3_N-like 77..152 CDD:475130 11/47 (23%)
Ubl1_cv_Nsp3_N-like 153..228 CDD:475130
Ubl1_cv_Nsp3_N-like 229..304 CDD:475130
Blue background indicates that the domain is not in the aligned region.

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