DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL40 and Gm44504

DIOPT Version :10

Sequence 1:NP_476776.1 Gene:RpL40 / 33629 FlyBaseID:FBgn0003941 Length:128 Species:Drosophila melanogaster
Sequence 2:NP_001265200.1 Gene:Gm44504 / 100169864 MGIID:5621304 Length:157 Species:Mus musculus


Alignment Length:95 Identity:33/95 - (34%)
Similarity:55/95 - (57%) Gaps:7/95 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
            ||:.||.|.|:..:|:|...:.:..:|..:.||..:|..||||:|.||.|.|.:.||||||...|
Mouse     1 MQLTVKALQGRECSLQVAEDELVSTLKHLVSDKLNVPVRQQRLLFKGKALADEKRLSDYNIGPNS 65

  Fly    66 TLHLVLRLRGGIIEPSLRILAQKYNCDKMI 95
            .|:||       ::|..::|.::.:..:::
Mouse    66 KLNLV-------VKPLEKVLLEEGSAHRLV 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL40NP_476776.1 Ubl_ubiquitin 1..76 CDD:340501 31/74 (42%)
Ribosomal_L40e 79..126 CDD:395807 2/17 (12%)
Gm44504NP_001265200.1 Ubl_UBL4A_like 1..72 CDD:340505 31/77 (40%)
Tugs 96..142 CDD:465528
Blue background indicates that the domain is not in the aligned region.

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