DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and Pcdhb5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_444360.1 Gene:Pcdhb5 / 93876 MGIID:2136739 Length:792 Species:Mus musculus


Alignment Length:768 Identity:222/768 - (28%)
Similarity:357/768 - (46%) Gaps:91/768 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 REFTLDPVTGEVKTNVVLDREGMRDHYDLVVLSSQ-----PTYPIEVRIKVLDVNDNSPEFPEPS 160
            ::|.||..||::.....||||.:....|..||..|     |....:..:.:.|:||||||||:..
Mouse    72 QQFILDSETGDLLLREKLDREELCGSVDPCVLHFQVFLEKPVQFFQGELLIQDINDNSPEFPDKE 136

  Fly   161 IAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETT 225
            :.:...|::..|||..|..|.|.|||.||: .||.:   |.::.|.::|..|..| ..|..|...
Mouse   137 LLLKILENSQPGTRFSLKLAQDLDVGSNGL-QQYTV---NPNSHFHVLTRNNSEG-KKYPELVQD 196

  Fly   226 GNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVV 290
            ..||||.:....|.::|.|||||||.|...|.:.|:|:|||.|.|.::.|.|.:.|::.|.:||:
Mouse   197 RALDREEQAELSLILTALDGGSPPRSGTALVRILIMDINDNAPEFVNNPYEVQVLESSPPDSPVL 261

  Fly   291 TVMASDNDLGDNSKITYYL----AETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFT 351
            ||.|.|.|.|:..:::|.|    .|.:..|::|..||.|....:::..:         .||....
Mouse   262 TVFAQDADAGNFGRVSYGLFQASDEIQKTFSINEFTGEIRLKTKLDFEK---------TKSYHVE 317

  Fly   352 VFARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDS 416
            :.|.|.|.  ..|:..|.:.:||.||:.|.::.     ....::|.||:.. ||||.:.::|.||
Mouse   318 IEATDGGG--LSGKGSVVIEVLDVNDNAPELTI-----SSLTSSVPENSPE-TVVAIIRIRDRDS 374

  Fly   417 GLNGRTSVRIVSGNELGHFRLEEA-ADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHL 480
            |.||:   .|.|.::...|.|:.: .:.:.:.....||||...:||:|:...|.||| |.||.|.
Mouse   375 GENGK---MICSISDHVPFILKPSYKNFYTLVTESPLDRESRAEYNITITVSDLGTP-RLTTQHT 435

  Fly   481 I-IDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILSGNELK---- 540
            | :.|:|:||:.|.|.::.|:..:.|.......:.:|:|||.|:|.||.:.|.:|..::.:    
Mouse   436 ITVKVSDINDNAPAFSQTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSLLPPHDQQLALH 500

  Fly   541 -WFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQ 604
             ..|::...|.:.....||.|.....|..:.|.|.|.....:...::|::||:||.||......|
Mouse   501 SLISINADNGQLFALSALDYEALQGFEFYVGATDRGSPELSSQALVRVVVLDDNDNAPFVLYPLQ 565

  Fly   605 NVT------LGEDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRR 663
            |.:      |...|.|..:|..:.|.|.|.|.|..::|.|..:.|   |..|::.|..|::.|.|
Mouse   566 NASAPCTEVLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATE---PGLFSVWAHNGEVRTTR 627

  Fly   664 PLDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYI-YSLADDDDDIKLK 727
            .|......::.:.::.:|.|.|   ..:|:|.|:|..|:.....:.|...: ...|.||.|:   
Mouse   628 LLSERDAPKHRLLLLVKDNGEP---QRSASVTLHVLLVDGFSQPYLPLPEVARDPAQDDPDV--- 686

  Fly   728 KEVEKERILLHVTASDKDDGDNALIEYRLESGGEGLFQLDARSGAISLRGDAPASMHWKPHYKLL 792
                   :.|::..:........|:...:..|    .:|..|:...||.|.:....|:..|   |
Mouse   687 -------LTLYLVIALASVSSLFLLSVLMFVG----VRLCRRAREPSLGGCSVPEGHFPGH---L 737

  Fly   793 VSARDAGQ-RRSQQDAIVEIVLKSKLEMLECGQAQAGGYEF-------QMVED 837
            |....||. .:|.|           .:|...|::..|.::|       .||:|
Mouse   738 VDVSHAGTLSQSYQ-----------YDMCLTGESGTGEFKFLKPIVPNLMVQD 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 16/55 (29%)
Cadherin_repeat 163..266 CDD:206637 39/102 (38%)
Cadherin_repeat 275..378 CDD:206637 30/106 (28%)
Cadherin_repeat 393..490 CDD:206637 36/98 (37%)
Cadherin_repeat 498..594 CDD:206637 24/100 (24%)
Cadherin_repeat 603..704 CDD:206637 29/106 (27%)
Cadherin_repeat 735..814 CDD:206637 16/79 (20%)
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhb5NP_444360.1 Cadherin_2 29..111 CDD:462413 13/38 (34%)
Cadherin_repeat 139..237 CDD:206637 39/102 (38%)
Cadherin_repeat 245..342 CDD:206637 30/107 (28%)
Cadherin_repeat 354..446 CDD:206637 36/96 (38%)
Cadherin_repeat 454..556 CDD:206637 25/101 (25%)
Cadherin_repeat 575..663 CDD:206637 26/93 (28%)
Cadherin_C_2 687..769 CDD:465139 20/99 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.