DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga12

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291073.1 Gene:Pcdhga12 / 93724 MGIID:1935229 Length:932 Species:Mus musculus


Alignment Length:1004 Identity:267/1004 - (26%)
Similarity:428/1004 - (42%) Gaps:176/1004 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 RAVDTSADFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE----------------FTLDPVTGE 111
            :|..|...:.|.|...:|:.||.|      |......|||                |.|:|.:|.
Mouse    25 KAGSTQIRYSVPEELEKGSRVGNI------SKDLGLEPRELEKRGVRIVSRGRAQLFALNPRSGS 83

  Fly   112 VKTNVVLDRE-----GMRDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATS 171
            :.|...:|||     .::...:|.:|.........|.|:|.|:|||:|.|.|..:.|..||:|.:
Mouse    84 LVTAGRIDREELCMGSIKCQLNLEILMEDIGKIYGVEIEVRDINDNAPYFRESELEIKMSENAAA 148

  Fly   172 GTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSY 236
            |.|..|..|.|.|:|:|.: ..|::    ..|....:...|.:....|..|....:||||.:.::
Mouse   149 GMRFPLPHAWDPDIGKNSL-QSYQL----SPNAHFSLEVQNGADGNKYPELVLESSLDREEKAAH 208

  Fly   237 QLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGD 301
            .|.::|.|.|.|.|.|..::.|.::|.|||.|.|..|:|.||:.|....||.::.|.|:|.|.|.
Mouse   209 LLVLTASDAGDPVRTGTARIRVMVVDANDNAPAFARSEYRVSVRENVAVGTQLLLVNATDPDEGA 273

  Fly   302 NSKITYYLAETEHQ----FTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQ 362
            |:::.|.....:.:    |.::...|.|||...:|           .::|..:.:..:...:...
Mouse   274 NAEVIYSFRYVDDKAAKVFKLDSNLGTISTIGELN-----------HEESGFYEMEVQATDNAGY 327

  Fly   363 DGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIV 427
            ..|..|.|.:||.||:.|.::.....:     :|.||:..||::|.:.|.|.|||.||:.   |.
Mouse   328 SARAKVLVTVLDVNDNAPEVAITSLTN-----SVPENSPQGTLIALLNVNDQDSGENGQV---IC 384

  Fly   428 SGNELGHFRLEEA-ADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHE 491
            |..|...|:||:: .:.:.:..:.||||||:..||:|:.|.|:|:|..||..||.:|:.|.||:.
Mouse   385 SIQENLPFKLEKSYGNYYRLVTDAVLDREEVPSYNITMTATDRGSPPLTTETHLALDIADTNDNS 449

  Fly   492 PVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHY----DILSGNEL-KWFSMDPLTGLI 551
            |||.::.|.|.:.|..|.|:.:||:||.|.|:..||||.|    |...|..| .:.|::..||::
Mouse   450 PVFLQASYWAYIPENNPRGASIASVTAHDPDSDKNAQVTYSLAEDTHQGVPLSSYVSINSDTGVL 514

  Fly   552 VTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------SQREQNVTLG- 609
            ......|.|....::|.:.|||.|..|..:...|.:.:||:||..|:.      :.....|.|. 
Mouse   515 YALHSFDYEQFPDLQLQVIARDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTLPTDGSTGVELAP 579

  Fly   610 EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPL-DREKMSQY 673
            ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||:::|.|.| ||:.:.| 
Mouse   580 RSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE---PGLFSVGLHTGEISTARALMDRDALKQ- 640

  Fly   674 EISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLAD---DDDDIKLKKEVEKERI 735
            .:.|..:|.|.| |.|||.|:.:.:||               |:.|   |.|:::.....|...:
Mouse   641 NLVVSVQDHGQP-PLSATVTLTVAIAD---------------SIPDVLADLDNLESPSTSETSGL 689

  Fly   736 LLHVTASDKDDGDNALI--------------EYR-LESGGEGLFQLDARSGAISLRGDAPASMHW 785
            .|::..:........|:              ..| |.:||.||..: |.|..:.:.| ..|.:..
Mouse   690 TLYLVVAVAAVSTVFLVFVLVLLALRLRRWHSLRLLRAGGPGLADV-AASHFVGVDG-VQAFLQT 752

  Fly   786 KPHYKLLVSARDAGQRRSQ--------QDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQQR 842
            ..|...|.    ||.|:|.        .|.::......|.|.|    ..:|...|.. ::|...:
Mouse   753 YSHEVSLT----AGSRKSHLIFPQPNYADTLISQESCEKTEPL----LPSGDSVFSK-DNHALNQ 808

  Fly   843 NSQPNREVGIVQVK--STNGKANSHIEYDIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLT 905
            .:.||.:....|.:  .|:|..|         ||.             |...|.::.:....:..
Mouse   809 QAPPNTDWRFSQAQRPGTSGSQN---------GDE-------------TGTWPNNQFDTEMLQAM 851

  Fly   906 ILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVR 970
            ||||:|.::..:::               |...|....|.....|..:|.......|.:|:    
Mouse   852 ILASASEAADGSST---------------LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI---- 897

  Fly   971 DRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
               .|.|:    :|||...::....|..|
Mouse   898 ---PGSNA----TLTNAAGKRDGKAPAGG 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 25/101 (25%)
Cadherin_repeat 163..266 CDD:206637 31/102 (30%)
Cadherin_repeat 275..378 CDD:206637 26/106 (25%)
Cadherin_repeat 393..490 CDD:206637 39/97 (40%)
Cadherin_repeat 498..594 CDD:206637 33/100 (33%)
Cadherin_repeat 603..704 CDD:206637 33/102 (32%)
Cadherin_repeat 735..814 CDD:206637 19/101 (19%)
Cadherin 843..>907 CDD:394985 10/65 (15%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga12NP_291073.1 Cadherin_2 30..112 CDD:462413 20/87 (23%)
Cadherin_repeat 137..238 CDD:206637 31/105 (30%)
Cadherin_repeat 246..343 CDD:206637 26/107 (24%)
Cadherin_repeat 355..448 CDD:206637 39/95 (41%)
Cadherin_repeat 456..558 CDD:206637 34/101 (34%)
Cadherin_repeat 579..666 CDD:206637 29/91 (32%)
Cadherin_C_2 689..772 CDD:465139 18/88 (20%)
Cadherin_tail 811..>905 CDD:435046 24/141 (17%)
Blue background indicates that the domain is not in the aligned region.

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