DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga11

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291072.1 Gene:Pcdhga11 / 93723 MGIID:1935228 Length:933 Species:Mus musculus


Alignment Length:977 Identity:261/977 - (26%)
Similarity:411/977 - (42%) Gaps:211/977 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FTLDPVTGEVKTNVVLDREGMRD-------HYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPS 160
            |:|:|..|.:.|...:|||.:.|       :.:::|..:...|.:||  :|||:|||:|.|.|..
Mouse    75 FSLNPRGGSLVTAGRIDREELCDTMPSCMLNLEILVEETLKIYGVEV--EVLDINDNAPSFREEE 137

  Fly   161 IAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTS-YLHLET 224
            :.|..||..:.|:|..|.:|.|.|.|.|.: ..|::   :..:.|.|.......||.: .|.||.
Mouse   138 VEIKVSEHTSPGSRFPLPSARDPDAGMNSL-QSYQL---SPSSYFSLQVRGGTDGDKNPELVLEE 198

  Fly   225 TGNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPV 289
              .||||...|:.|.::|.|||.|.|.|.:.:.|.:|||||:.|.|....|.||:.|....||.|
Mouse   199 --GLDREKEASHHLLLTALDGGDPVRKGTVPIRVVVLDVNDHIPKFTQPVYRVSIPENLSSGTRV 261

  Fly   290 VTVMASDNDLGDNSKITYYLAETEHQ----FTVNPETGVISTTERVNCPQ----QTNVKSSASQK 346
            :.|.|||.|.|.|.::.|...:.:.:    |.:|.:||.:...:.::..:    :..::.     
Mouse   262 LVVNASDPDEGINGEVIYSFRKMKSKASEIFQLNSQTGEVLVGKPLDFEKYRFYEMEIQG----- 321

  Fly   347 SCVFTVFARDHGSPRQDG-----RTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVV 406
                           |||     .|.:.:.:.|.||:.|.|:.....:     :|.||:.:|||:
Mouse   322 ---------------QDGGGLLSTTTLLITVEDVNDNAPEITVTSASN-----SVPENSPSGTVI 366

  Fly   407 AAVAVKDSDSGLNGRTSVRIVSGNELGHFRLEEA-ADLHIVRVNGVLDREEIGKYNLTVVAMDQG 470
            |.:.|:|.|||.||:.|..|.||..   |:||:. .:.:.:..|..||||::..||:|::|.|||
Mouse   367 ALLNVQDQDSGENGQVSCFIPSGLP---FKLEKTYGNYYKLITNSELDREQVESYNITLIAKDQG 428

  Fly   471 TPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDI-- 533
            :|..:|..||::.|.|.||:.|||..|.|.|.:.|..|.||.:.|:||.|.|:..||||.|.:  
Mouse   429 SPPLSTETHLLLKVADANDNPPVFSSSSYLAYIPENNPRGSSIFSVTAIDRDSRENAQVTYSLAE 493

  Fly   534 --LSGNEL-KWFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDE 595
              :.|..| .:.|::..||::......|.|...|::|.::|.|.|..|..:...|.:.:||:||.
Mouse   494 YTIQGTPLSSYVSINSDTGVLYALQSFDYEQFQTLQLGVTASDNGDPPLSSNISLTLFVLDQNDN 558

  Fly   596 APQF------SQREQNVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALD 653
            .|:.      :.....|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::.
Mouse   559 TPEILYPSLPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE---PGLFSVG 620

  Fly   654 ALTGQL-TTRRPLDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSL 717
            ..||:: |.|..:|::.:.| .:.|..:|.|.| |.|  |||.|.|| |.|:.|           
Mouse   621 LHTGEVRTARAMMDKDALKQ-SLVVTVQDHGQP-PLS--ATVKLTVA-VADSIP----------- 669

  Fly   718 ADDDDDIKLKKEVEKERILLHVTASDKDDGDNALI---------------------------EYR 755
                       ||.::.:.|...|:..:.|....:                           ..|
Mouse   670 -----------EVLEDLVSLESPANPDESGLTLYLVVAITAVSCIFLIFVMVLLALKLRRWHSLR 723

  Fly   756 LESGGEGLFQ---------------LDARSGAISLRGDAPAS--MHWKPHY-KLLVSARDAGQRR 802
            |.....||..               |...|..:||..|:..|  :..:|:| ..|:|....|  :
Mouse   724 LLQAASGLAGVPPSHFVGVDGMRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCG--K 786

  Fly   803 SQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQQRNSQPNREVGIVQVKSTNGKANSHIE 867
            |:...|.|   .|...:.:|...     :.|....:...|.||..|       ..|:|..|    
Mouse   787 SEPLLITE---DSTTVLGKCEPT-----DIQQAPPNTDWRFSQAQR-------PGTSGSQN---- 832

  Fly   868 YDIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAI 932
                 ||.             |...|.::.:....:..||||:|.::..:::             
Mouse   833 -----GDE-------------TGTWPNNQFDTEMLQAMILASASEAADGSST------------- 866

  Fly   933 IDLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPV 997
              |...|....|.....|..:|.......|.:|:       .|.|:    :|||...::....|.
Mouse   867 --LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPA 918

  Fly   998 TG 999
            .|
Mouse   919 GG 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 17/55 (31%)
Cadherin_repeat 163..266 CDD:206637 37/103 (36%)
Cadherin_repeat 275..378 CDD:206637 25/115 (22%)
Cadherin_repeat 393..490 CDD:206637 40/97 (41%)
Cadherin_repeat 498..594 CDD:206637 32/100 (32%)
Cadherin_repeat 603..704 CDD:206637 33/102 (32%)
Cadherin_repeat 735..814 CDD:206637 21/123 (17%)
Cadherin 843..>907 CDD:394985 10/63 (16%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga11NP_291072.1 Cadherin_2 30..112 CDD:462413 10/36 (28%)
Cadherin_repeat 137..238 CDD:206637 37/106 (35%)
Cadherin_repeat 246..343 CDD:206637 25/116 (22%)
Cadherin_repeat 355..448 CDD:206637 40/95 (42%)
Cadherin_repeat 456..558 CDD:206637 33/101 (33%)
Cadherin_repeat 579..666 CDD:206637 31/94 (33%)
Cadherin_C_2 689..771 CDD:465139 10/81 (12%)
Cadherin_tail 812..>906 CDD:435046 25/148 (17%)
Blue background indicates that the domain is not in the aligned region.

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