DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and Pcdhga8

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291069.1 Gene:Pcdhga8 / 93716 MGIID:1935221 Length:932 Species:Mus musculus


Alignment Length:1002 Identity:265/1002 - (26%)
Similarity:416/1002 - (41%) Gaps:188/1002 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 FEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE----------------FTLDPVTGEVKTNVVLD 119
            :.|.|...:||.||.|      |......|||                |:|:|..|.:.|...:|
Mouse    33 YSVPEETDKGTVVGNI------SKDLGLEPRELAERGVRIVSRGRSQLFSLNPRGGSLVTAGRID 91

  Fly   120 REGMRDH-----YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDA 179
            ||.:...     .::.:|..:......|.|::.|:|||:|:|....:.:..:|.|..|.|..|..
Mouse    92 REELCAQSTPCLVNINILVEEKGKLFGVEIEITDINDNNPKFHVGDLEVKINEIAAPGARYPLPE 156

  Fly   180 ATDADVGENGVTDQYEIVAGNVDNKFRLVT----TANPSGDTSYLHLETTGNLDRESRGSYQLNI 240
            |.|.|||.|.: ..|:: :.|......|.|    |.||.     |.||.|  ||||...::.|.:
Mouse   157 AVDPDVGINSL-QSYQL-SPNRHFSLHLQTGDDGTINPE-----LVLERT--LDREEEPTHHLVL 212

  Fly   241 SARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKI 305
            :|.|||.|.|.....:.:|:||.|||.|:||...|.|.:.|...|||.::||.|||.|.|.|.|:
Mouse   213 TASDGGEPRRSSTALIQITVLDTNDNAPVFDQPVYRVKVLENVAPGTLLLTVRASDPDEGVNGKV 277

  Fly   306 TYYLAETEHQ----FTVNPETGVISTTERVNCPQQTNVKSSASQKSC---VFTVFARDHGSPRQD 363
            ||...:...:    |.::..||            :..|..:...:.|   ...:.|.|.|:..  
Mouse   278 TYKFRKINEKQSLLFHLHENTG------------EMTVAKNLDYEECSLYEMEIQAEDVGALL-- 328

  Fly   364 GRTYVTVNLLDTNDHDP--IISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRI 426
            ||:.|.:.:.|.||:.|  .|:..|.|       |.||::.|||:|.:.|.|.|||.||:.   :
Mouse   329 GRSKVIIMVEDVNDNRPEVTITSLFNP-------VLENSLPGTVIAFLNVHDQDSGKNGQV---V 383

  Fly   427 VSGNELGHFRLEEAADLHIVRVN-GVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDH 490
            ...::...|:||::.|.:...|. ..||||::..||:||:|.|.|.|..:|..::.:.|.|.||:
Mouse   384 CYTHDNLPFKLEKSIDNYYRLVTWKYLDREKVSTYNITVIASDLGAPPLSTETYIALTVADTNDN 448

  Fly   491 EPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHY----DILSGNEL-KWFSMDPLTGL 550
            .|.|..:.|:|.|.|....|:.:.|:||.|.|:..||||.|    |.:.|..| .:.|::..||:
Mouse   449 PPRFSHTSYTAYLPENNLRGASIFSLTAHDPDSQENAQVTYSVSEDTIQGVPLSSYISINSDTGI 513

  Fly   551 IVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------SQREQNVTLG 609
            :......|.|....::|.:.|.|.|..|..:...|.:.:||:||.||:.      :.....|.|.
Mouse   514 LYALQSFDFEKIQDLQLLVIATDSGSPPLSSNVSLSLFVLDQNDNAPEILYPSFPTDGSTGVELA 578

  Fly   610 -EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRP-LDREKMSQ 672
             ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|.|. |||:.:.|
Mouse   579 PRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE---PGLFSVGLHTGEVRTARALLDRDALKQ 640

  Fly   673 YEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLAD----------DDDDIKLK 727
             .:.:..:|.|.| |.|||.|:.:.||   ::.|:.        |||          :|.|:.|.
Mouse   641 -NLVMAVQDHGQP-PLSATVTLTVAVA---NSIPEV--------LADLSSIMTPEVPEDSDLTLH 692

  Fly   728 KEVEKERI----LLHVTASDKDDGDNALIEYRLESGGEGLFQLDARSGA--------ISLRGDAP 780
            ..|....:    |:.|.         .|:..||:...:......:|||.        :.:.| ..
Mouse   693 LVVAVAVVSCVFLVFVI---------VLLALRLQRWQKSRQLQGSRSGLAPAPPSHFVGIDG-VQ 747

  Fly   781 ASMHWKPHYKLLVSARDAGQRRSQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQ-QRNS 844
            |.:....|...|.|..........|....::::..  |..|...:.....:|...:|.:. ...:
Mouse   748 AFLQTYSHEVSLTSGSQTSHIIFPQPNYADMLINQ--ESCEKNDSLLTSIDFHENKDEDACAPQA 810

  Fly   845 QPNREVGIVQVK--STNGKANSHIEYDIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTIL 907
            .||.:....|.:  .|:|..|         ||.             |...|.::.:....:..||
Mouse   811 PPNTDWRFSQAQRPGTSGSQN---------GDE-------------TGTWPNNQFDTEMLQAMIL 853

  Fly   908 ASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVRDR 972
            ||:|.::..:::               |...|....|.....|..:|.......|.:|:      
Mouse   854 ASASEAADGSST---------------LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI------ 897

  Fly   973 DAGVNSRISYSLTNNPNQQFRIGPVTG 999
             .|.|:    :|||...::....|..|
Mouse   898 -PGSNA----TLTNAAGKRDGKAPAGG 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 24/101 (24%)
Cadherin_repeat 163..266 CDD:206637 37/106 (35%)
Cadherin_repeat 275..378 CDD:206637 30/109 (28%)
Cadherin_repeat 393..490 CDD:206637 35/97 (36%)
Cadherin_repeat 498..594 CDD:206637 31/100 (31%)
Cadherin_repeat 603..704 CDD:206637 32/102 (31%)
Cadherin_repeat 735..814 CDD:206637 14/90 (16%)
Cadherin 843..>907 CDD:394985 10/65 (15%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga8NP_291069.1 Cadherin_2 30..112 CDD:462413 20/84 (24%)
Cadherin_repeat 139..238 CDD:206637 37/107 (35%)
Cadherin_repeat 246..343 CDD:206637 30/110 (27%)
Cadherin_repeat 356..448 CDD:206637 35/94 (37%)
Cadherin_repeat 456..558 CDD:206637 32/101 (32%)
Cadherin_repeat 579..664 CDD:206637 28/89 (31%)
Cadherin_C_2 688..772 CDD:465139 16/93 (17%)
Cadherin_tail 811..>905 CDD:435046 24/141 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.