DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga6

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291067.1 Gene:Pcdhga6 / 93714 MGIID:1935218 Length:932 Species:Mus musculus


Alignment Length:1023 Identity:276/1023 - (26%)
Similarity:425/1023 - (41%) Gaps:207/1023 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 SPSGEMQSRAVDTSADFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE----------------F 103
            |.:|:::         :.:.|...:|:.||.|      :......|||                |
Mouse    26 SEAGQLR---------YSIPEEVEKGSFVGSI------AKDLGLQPRELAERGIRIISRGRSQLF 75

  Fly   104 TLDPVTGEVKTNVVLDREGMRDH-------YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSI 161
            :|:..:|.:.|...:|||.:...       :::::......||:||  :::|:|||:|.|.:..:
Mouse    76 SLNQRSGSLVTAGRIDREELCAQSAPCLVSFNILIEDKLNLYPVEV--EIVDINDNAPRFLKEEM 138

  Fly   162 AISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTG 226
            .:...|:|...:..||....|.|||.|.:  |...::|:  :.|.:...:...| ..|..|....
Mouse   139 ELKILENAALSSHFLLMGVYDPDVGVNSI--QGFKLSGS--SHFSVHVQSQDHG-PKYPELVLEH 198

  Fly   227 NLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVT 291
            :||||....:.|.:.|.|||.|.|.|..::.||::|||||.|:|....|.||:.|....||.|:|
Mouse   199 SLDREEEAVHHLVLVAMDGGDPVRTGMARILVTVVDVNDNAPVFTQPIYRVSVPENLPVGTRVLT 263

  Fly   292 VMASDNDLGDNSKITYYLA----ETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTV 352
            |.|:|.|.|.:::|||...    |....|.:||.||.|||:|.::         ....:.....|
Mouse   264 VNATDQDEGIHAEITYSFVRITEEISQIFCLNPLTGEISTSETLD---------YEDSRFYELDV 319

  Fly   353 FARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSG 417
            .|||. |..|| |..|.:.:||.||:.|.:   ....|.:  .:.||:.:|||:|...|.|.||.
Mouse   320 EARDQ-SDLQD-RAKVLITILDMNDNAPEV---VVTSGSR--AIAENSPSGTVIALFQVYDKDSE 377

  Fly   418 LNGRTSVRIVSGNELGHFRLEEAADLHIVRV-NGVLDREEIGKYNLTVVAMDQGTPARTTTAHLI 481
            .||   :.|.|.:|...|:|||:.|.:...| |..||||::..||:||.|.|:|||..:|...:.
Mouse   378 RNG---LVICSISESLPFKLEESLDNYFRLVTNTELDREQVSSYNITVTATDRGTPPLSTKIFIS 439

  Fly   482 IDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDI----LSGNELKWF 542
            :||.|:||:.|||.:|.||..:||..|.|..:.|:.|.|.|:..||::.|.:    |.|..|..|
Mouse   440 LDVADINDNPPVFSRSSYSVYVSENNPKGVSIFSLNAVDPDSEENAEIIYSLAKETLQGTPLSSF 504

  Fly   543 -SMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------S 600
             |::.:||::......|.|....:.|.::|.|.|..|..:...|.:.:||:||..|:.      :
Mouse   505 LSINSITGVLYALCSFDYEQFRELNLLVTASDRGKPPLSSNVSLNLFVLDQNDNVPEILYPVLPT 569

  Fly   601 QREQNVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRP 664
            .....|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|.|.
Mouse   570 DGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLIKASE---PGLFSVGLHTGEIRTARV 631

  Fly   665 -LDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLAD-DDDDIKLK 727
             |||:.:.| .:.|..:|.|.| |.|||.|:.:.||   .:.|..        ||| ...|:..|
Mouse   632 LLDRDALKQ-SLVVAVQDHGQP-PLSATVTLTVAVA---SSIPDI--------LADLGSLDLPHK 683

  Fly   728 KEVEKERILLHVTASDKDDGDNALIEYRLESGGEGLFQLDARSGAISLRGDAPASMHWKPHYKLL 792
            .|.....|.|.|..:.......|.:                 .|.:.||     ..||  |...|
Mouse   684 SEDSSLTIYLVVAVATVSCIFFAFV-----------------MGLLVLR-----LWHW--HKSRL 724

  Fly   793 VSARDAGQRRSQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHE-----QQRNS-----QPN 847
            :.|...|.........|.|               .|...|.....||     ..|.|     |||
Mouse   725 LKATRKGVSNMSTSHFVGI---------------DGVQAFLQTYSHEVSLTADSRKSHLIFPQPN 774

  Fly   848 -------------REVGIVQVKST--------NGKANSHIEYDIIQGDR-----AQNFRIDTRSG 886
                         .|..::|..|.        :.:|..:.::...|..|     :||       |
Mouse   775 YAHTLISQEGCEKNEPLLIQEDSAFCKEEDSLDQQAPPNTDWRFSQAQRPGTSGSQN-------G 832

  Fly   887 RITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPT 951
            ..|...|.::.:....:..||||:|.::..:::               |...|....|.....|.
Mouse   833 DETGTWPNNQFDTEMLQAMILASASEAADGSST---------------LGGGAGTMGLSARYGPQ 882

  Fly   952 ISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            .:|.......|.:|:       .|.|:    :|||...::....|..|
Mouse   883 FTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 21/103 (20%)
Cadherin_repeat 163..266 CDD:206637 32/102 (31%)
Cadherin_repeat 275..378 CDD:206637 38/106 (36%)
Cadherin_repeat 393..490 CDD:206637 40/97 (41%)
Cadherin_repeat 498..594 CDD:206637 30/100 (30%)
Cadherin_repeat 603..704 CDD:206637 33/102 (32%)
Cadherin_repeat 735..814 CDD:206637 15/78 (19%)
Cadherin 843..>907 CDD:394985 15/94 (16%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga6NP_291067.1 Cadherin_2 30..112 CDD:462413 15/96 (16%)
Cadherin_repeat 137..238 CDD:206637 32/105 (30%)
Cadherin_repeat 246..343 CDD:206637 38/107 (36%)
Cadherin_repeat 356..448 CDD:206637 40/94 (43%)
Cadherin_repeat 463..558 CDD:206637 28/94 (30%)
Cadherin_repeat 579..664 CDD:206637 29/89 (33%)
Cadherin_C_2 688..772 CDD:465139 21/122 (17%)
Cadherin_tail 811..>905 CDD:435046 21/126 (17%)
Blue background indicates that the domain is not in the aligned region.

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