DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291066.1 Gene:Pcdhga5 / 93713 MGIID:1935217 Length:932 Species:Mus musculus


Alignment Length:1079 Identity:275/1079 - (25%)
Similarity:446/1079 - (41%) Gaps:256/1079 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LLLFFLLLAGRESLCQTGDTKLELLAPRGRSYATTYEQYAAFPRRRSSSSSPSGEMQSRAVDTSA 69
            ||.||:||.   :||..|                                  .|:::        
Mouse    13 LLTFFMLLG---TLCAPG----------------------------------KGQIR-------- 32

  Fly    70 DFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE----------------FTLDPVTGEVKTNVVL 118
             :.|.|...:|:.||.|      |......|||                |:|:|..|.:.|...:
Mouse    33 -YSVREELDKGSFVGNI------SKDLGLEPRELAERGVRIISRGRSQLFSLNPRGGSLVTAGRI 90

  Fly   119 DREGM-------RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLL 176
            |||.:       ...::::|.:....|.:||  ::||:|||.|.|.:..:.:..:|:|.:||||:
Mouse    91 DREELCVQSSPCLVSFNILVENKMKIYGVEV--EILDINDNFPRFRDEELKVKVNENAAAGTRLV 153

  Fly   177 LDAATDADVGENGVTDQYEIVAG---NVDNKFRLVTTANPSGDTSYLHLETT--GNLDRESRGSY 236
            |..|.|.|||.|.: ..|::.:.   ::|.|         ||.....|.|..  ..||||...::
Mouse   154 LPFARDGDVGVNSL-QGYKLSSNRHFSLDVK---------SGSDGQKHPELVLEQPLDREKESAH 208

  Fly   237 QLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGD 301
            .|.::|.|||:|.....:.::||:||.|||.|:|..|:|.||:.|....||.::|:.|:|.|.|.
Mouse   209 DLVLTALDGGNPVLSSTVHISVTVLDANDNAPLFTQSEYRVSVPENTPVGTRLLTLTATDADEGI 273

  Fly   302 NSKITYYLAETEHQ----FTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQ 362
            |:|:|:.....|.:    |.::...|.|||.:.::..:         .:..:..|.|:|.|:...
Mouse   274 NAKLTFSFRNEEDKISETFQLDSNLGEISTIQSLDYEE---------SRFYLMEVVAQDGGALLA 329

  Fly   363 DGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIV 427
            ..:..|||.  |.||:.|.:...     ...::|.|:.:.||::|..:|.|:|||.||..|..|.
Mouse   330 SAKVLVTVQ--DVNDNAPEVILT-----SLTSSVSEDCLPGTIIALFSVHDADSGENGEISCSIP 387

  Fly   428 SGNELGHFRLEEAAD--LHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDH 490
            ....   |:||::.|  .|::... .|||||...||:||..:|:|||..:|..|:.:.|.|:||:
Mouse   388 KNLP---FKLEKSVDNYYHLLTTR-ALDREETSDYNITVTVVDRGTPPLSTENHISLKVADINDN 448

  Fly   491 EPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILSGNELK------WFSMDPLTG 549
            .|.|.:..||..:||..|.|..:.|:.|.|.|:|.||||.|. |:.|..:      :.|::..||
Mouse   449 PPTFSRPFYSTSISENNPRGVSIFSVYAYDADSGDNAQVTYS-LAENTFQEVPVSSYVSINSDTG 512

  Fly   550 LIVTTGPLDRE-IRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------SQREQNVT 607
            ::......|.| :|| ::|.::|:|.|..|..:...:.:.:||:||..|:.      :.....|.
Mouse   513 VLYALQSFDYEHLRD-LQLLVTAKDSGTPPLSSNVSMSLFVLDQNDNIPEILYPTIPTDGSTGVE 576

  Fly   608 LG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRP-LDREKM 670
            |. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|.|. |||:.:
Mouse   577 LAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE---PGLFSIGLHTGEVCTARALLDRDVL 638

  Fly   671 SQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLADDDDDIKLKKEVEKERI 735
            .| .:.|..:|.|.| |.|||.|:.:.|.|               |:.|...|:.          
Mouse   639 KQ-SLVVAVQDHGQP-PLSATVTLTIAVGD---------------SIPDVLTDLG---------- 676

  Fly   736 LLHVTASDKDDGD--------------------NALIEYRLESGGEGLFQLDARSGAISLRGDAP 780
             .|.|.::..|.|                    ..|:..||........ |...:|.::   |.|
Mouse   677 -NHNTLAEPQDSDLTLYLVVSVAVVSCVFLGFVTVLLALRLRHWHMSRL-LQTSTGRLA---DMP 736

  Fly   781 ASMHWKPHYKLLVSARDAGQRRSQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQQRNSQ 845
            ||     |:..:...:...|..|.:   :.:...||...|...|.   .|..:::.: |....|:
Mouse   737 AS-----HFVGMDGVQAYLQTYSHE---ISLTTDSKKSHLIFPQP---NYADRLISE-ESCEKSE 789

  Fly   846 P----------NREVGIVQVKSTNGKANSHIEYDIIQGDR-----AQNFRIDTRSGRITTARPLD 895
            |          ..|.|..|      :|..:.::...|..|     :||       |..|...|.:
Mouse   790 PLLIPHNIHTHKEEPGDAQ------QAPPNTDWRFSQAQRPGTSGSQN-------GDETGTWPNN 841

  Fly   896 REEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAAV 960
            :.:....:..||||:|.::..:::               |...|....|.....|..:|......
Mouse   842 QFDTEMLQAMILASASEAADGSST---------------LGGGAGTMGLSARYGPQFTLQHVPDY 891

  Fly   961 GQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            .|.:|:       .|.|:    :|||...::....|..|
Mouse   892 RQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 25/103 (24%)
Cadherin_repeat 163..266 CDD:206637 35/107 (33%)
Cadherin_repeat 275..378 CDD:206637 29/106 (27%)
Cadherin_repeat 393..490 CDD:206637 37/98 (38%)
Cadherin_repeat 498..594 CDD:206637 32/102 (31%)
Cadherin_repeat 603..704 CDD:206637 33/102 (32%)
Cadherin_repeat 735..814 CDD:206637 16/98 (16%)
Cadherin 843..>907 CDD:394985 13/78 (17%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga5NP_291066.1 Cadherin_2 30..112 CDD:462413 19/96 (20%)
Cadherin_repeat 137..238 CDD:206637 35/110 (32%)
Cadherin_repeat 246..343 CDD:206637 29/107 (27%)
Cadherin_repeat 355..448 CDD:206637 37/96 (39%)
Cadherin_repeat 457..558 CDD:206637 33/102 (32%)
Cadherin_repeat 579..666 CDD:206637 30/91 (33%)
Cadherin_C_2 688..772 CDD:465139 16/95 (17%)
Cadherin_tail 811..>905 CDD:435046 21/126 (17%)
Blue background indicates that the domain is not in the aligned region.

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