DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga2

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291063.1 Gene:Pcdhga2 / 93710 MGIID:1935214 Length:931 Species:Mus musculus


Alignment Length:966 Identity:264/966 - (27%)
Similarity:411/966 - (42%) Gaps:191/966 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FTLDPVTGEVKTNVVLDREGM-------RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPS 160
            |.|:|.:|.:.|...:|||.:       ..:::|::......|.:||  :|.|||||:|.|....
Mouse    75 FALNPRSGSLVTAGRIDREELCAQSTPCLVNFNLLLEDKLTIYSVEV--EVTDVNDNAPRFGVED 137

  Fly   161 IAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETT 225
            ..:..||:.|.|.|:.|.:|.||||||| ...:|::   |.::.|.|.......|: .|..|...
Mouse   138 PELKISETTTPGFRIPLKSAHDADVGEN-TLQKYKL---NSNDHFSLDVRTGADGN-KYPELVLE 197

  Fly   226 GNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVV 290
            ..||||....:.|.:.|.|||:|.|.|..::.|.:||.|||.|.|..::|.|.:.|....||.::
Mouse   198 RALDREEEAVHHLVLVASDGGNPVRSGTCRIRVKVLDANDNAPAFTQAEYRVRVPENTPVGTRIL 262

  Fly   291 TVMASDNDLGDNSKITYYL----AETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFT 351
            ||.|:|.|.|.|:::||:.    .||...|.:...:|.|:.|           ||...:|:....
Mouse   263 TVTATDADEGYNAQVTYFQEHDPGETTDAFELKSTSGDITIT-----------KSLDYEKAKFHE 316

  Fly   352 VFARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDS 416
            :.......|....||.|.|.:||.||:.|    .|:.... .|:|.|:|..|||:|...|.|.||
Mouse   317 IDIEAQDGPGLLTRTKVIVTVLDVNDNAP----EFYMTSA-TASVPEDAPLGTVIALFNVHDRDS 376

  Fly   417 GLNGRTSVRIVSGNELGHFRLEEAADLHIVRV-NGVLDREEIGKYNLTVVAMDQGTPARTTTAHL 480
            |.|   :|...|..|:..|:||.:.|.:...| ...||||:...||:||.|.|.|:|:.:|.|||
Mouse   377 GQN---AVVTCSLPEMLPFKLERSVDSYYRLVTTRALDREQFSFYNITVSAKDGGSPSLSTDAHL 438

  Fly   481 IIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHY----DILSGNEL-K 540
            ::.|.|:||:.|.|.:..|||.:.|..|.|:.:.|:.|:|.|:..||.|.|    |...|..| .
Mouse   439 LLQVADINDNPPSFPRRVYSAYIPENNPRGTSIFSVLASDPDSNDNAHVTYSLAEDSFQGAPLSS 503

  Fly   541 WFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------ 599
            :.|::..||::......|.|....::|.:.|.|.|..|..:...|.:.::|:||..|:.      
Mouse   504 YVSINSDTGVLYALRSFDYEQFQDLQLWVIAADSGNPPLSSNVSLSLFLVDQNDNTPEILYPALP 568

  Fly   600 SQREQNVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRR 663
            :.....|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|.|
Mouse   569 TDGSTGVELAPRSADPGYLVTKVVAVDKDSGQNAWLSYRLLKASE---PGLFSVGLHTGEVRTAR 630

  Fly   664 P-LDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLAD-------- 719
            . |||:.:.| .:.|..:|.|.| |.|||.|:.:.:|   ||.|:.        |||        
Mouse   631 ALLDRDALKQ-SLVVAVQDHGQP-PLSATVTLTIAIA---DNIPEV--------LADLGSIRTPA 682

  Fly   720 --DDDDIKLKKEVEKERI----LLHVTASDKDDGDNALIEYR---------LESGGEGLFQLDAR 769
              ||.::.|...|....:    |..|.         ||:..|         |::..:||..:.|.
Mouse   683 NPDDSELTLYLVVAVAVVSCVFLAFVI---------ALLALRLRRWHLSRMLQASRDGLGGIPAS 738

  Fly   770 ---------------SGAISLRGDAPAS--MHWKPHYKLLVSARDAGQRRSQQDAIVEIVLKSKL 817
                           |..:||..|:..|  :..:|:|               .|.::......|.
Mouse   739 HFVGVDGVRAFLQTYSHEVSLTADSGKSHIIFPQPNY---------------ADTLISQESCEKT 788

  Fly   818 EMLECGQAQAGGYEFQMVEDHEQQRNSQ--PNREVGIVQVK--STNGKANSHIEYDIIQGDRAQN 878
            :.|...|:        :::|..::...|  ||.:....|.:  .|:|..|         ||.   
Mouse   789 DFLSAPQS--------LLDDKREETPQQAPPNTDWRFSQAQRPGTSGSQN---------GDE--- 833

  Fly   879 FRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFA 943
                      |...|.::.:....:..||||:|.::..:::               |...|....
Mouse   834 ----------TGTWPNNQFDTEMLQAMILASASEAADGSST---------------LGGGAGTMG 873

  Fly   944 LDRESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            |.....|..:|.......|.:|:       .|.|:    :|||...::....|..|
Mouse   874 LSARYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 16/55 (29%)
Cadherin_repeat 163..266 CDD:206637 37/102 (36%)
Cadherin_repeat 275..378 CDD:206637 31/106 (29%)
Cadherin_repeat 393..490 CDD:206637 41/97 (42%)
Cadherin_repeat 498..594 CDD:206637 29/100 (29%)
Cadherin_repeat 603..704 CDD:206637 32/102 (31%)
Cadherin_repeat 735..814 CDD:206637 17/108 (16%)
Cadherin 843..>907 CDD:394985 11/67 (16%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga2NP_291063.1 Cadherin_2 30..112 CDD:462413 9/36 (25%)
Cadherin_repeat 139..238 CDD:206637 37/103 (36%)
Cadherin_repeat 246..343 CDD:206637 31/107 (29%)
Cadherin_repeat 353..448 CDD:206637 41/97 (42%)
Cadherin_repeat 456..558 CDD:206637 30/101 (30%)
Cadherin_repeat 579..666 CDD:206637 30/94 (32%)
Cadherin_C_2 688..772 CDD:465139 16/92 (17%)
Cadherin_tail 810..>904 CDD:435046 24/141 (17%)
Blue background indicates that the domain is not in the aligned region.

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