DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga1

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291062.1 Gene:Pcdhga1 / 93709 MGIID:1935212 Length:931 Species:Mus musculus


Alignment Length:976 Identity:261/976 - (26%)
Similarity:412/976 - (42%) Gaps:211/976 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FTLDPVTGEVKTNVVLDREGMRDH-------YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPS 160
            |:|:|.:|.:.|...:|||.:...       :::::.......||||  :::|:|||:|:|....
Mouse    75 FSLNPRSGSLVTAGRIDREELCAQSTPCVVSFNILMEDEMKLLPIEV--EIIDINDNTPQFQLEE 137

  Fly   161 IAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETT 225
            :.:..||..|.|||:.|....|.|||.|.: ..|::.|   :..|.|.....|.| .....:...
Mouse   138 LELKMSEITTPGTRIPLPLGQDLDVGINSL-QSYQLSA---NPHFSLDVQQGPEG-PQQPEMVLQ 197

  Fly   226 GNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVV 290
            ..||||....:.|.::|.|||||...|.||::|.::|||||||.|..::|:||:.|....||.::
Mouse   198 RPLDREKDAVHYLVLTASDGGSPIHSGTLQIHVQVVDVNDNPPAFTKAEYHVSVPENVPLGTRLL 262

  Fly   291 TVMASDNDLGDNSKITYYLAETEH----QFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFT 351
            .|.|:|.|.|.|.::||...:.:|    :|.::..||.:|..|.::..:              :.
Mouse   263 KVNATDPDEGANGRVTYSFHKVDHSVVRKFQLDAYTGELSNKEPLDFEE--------------YK 313

  Fly   352 VFARDHGSPRQDG-----RTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAV 411
            |:..:  ...|||     |..|.|.:||.||:.|.:......:     ||.||...||.:|.::|
Mouse   314 VYPME--IQAQDGAGLMARAKVLVTVLDVNDNAPEVGITSVTN-----TVPENFPPGTTIALISV 371

  Fly   412 KDSDSGLNGRTSVRIVSGNELGHFRLEEAADLHIVRV-NGVLDREEIGKYNLTVVAMDQGTPART 475
            .|.|:..||..:..| .||.  .|:||:..|.:...| ...||||:..::|:|:.|.|||||..:
Mouse   372 HDQDADNNGHITCSI-PGNL--PFKLEKLVDNYYRLVTERTLDREQSSRHNITITATDQGTPPLS 433

  Fly   476 TTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHY----DILSG 536
            |.||:.:.|.|:||:.||||:..||..:.|..|.|:.:.|:.|.|.|...||.|.|    |.:.|
Mouse   434 TQAHISLLVTDINDNPPVFEQDSYSVYIPENNPRGASIFSVKAQDADHNENALVTYALVEDTIQG 498

  Fly   537 NEL-KWFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKF-AYTQLKVIILDENDEAPQF 599
            ..| .:||::..||::......|.|....::|.:.|.|.| ||:. :...|.:.::|:||.||:.
Mouse   499 VPLSSYFSINSDTGVVYALQSFDYEQFRDLQLRVMAHDSG-NPQLSSNVSLSLFMIDQNDNAPEI 562

  Fly   600 ------SQREQNVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTG 657
                  :.....|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||
Mouse   563 LYPVLPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNSWLSYRLLKASE---PGLFSVGLHTG 624

  Fly   658 QLTTRRP-LDREKMSQYEISVIARDQGAPTPQSATATVWLNVAD-VND-----------NDPQFY 709
            ::.|.|. |:|:.:.| .:.|..:|.|.| |.|.|.|..:.||| :.|           .|||  
Mouse   625 EVRTARALLERDALKQ-SLVVAVQDHGQP-PLSTTVTFTIAVADSIPDLLADLGSMGTPADPQ-- 685

  Fly   710 PRHYIYSLADDDDDIKLKKEVEKERI---------------LLHVTASDKDDGDNALIEYRLESG 759
                       |.|:.|...|....:               |.|..:|           ..|::.
Mouse   686 -----------DSDLTLYLVVAVAVVSCIFLAFVIVLLVLKLRHWYSS-----------RLLQTE 728

  Fly   760 GEGLFQLDAR---------------SGAISLRGDAPAS--MHWKPHYKLLVSARDAGQRRSQQDA 807
            ..||..|.|.               |..|||..|:..|  :..:|:|               .|.
Mouse   729 ANGLTGLPASNFVGVDGVHAFLQTYSREISLTADSRKSHLIFPQPNY---------------ADT 778

  Fly   808 IVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQ--QRNSQPNREVGIVQVK--STNGKANSHIEY 868
            ::......|.|.|...|:        ::||.|:  .:.:.||.:....|.:  .|:|..|     
Mouse   779 LISHESCEKQEFLSAPQS--------LLEDKEEIFSQQAPPNTDWRFSQAQRPGTSGSQN----- 830

  Fly   869 DIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAII 933
                ||.             |...|.::.:....:..||||:|.::..:::              
Mouse   831 ----GDE-------------TGTWPNNQFDTEMLQAMILASASEAADGSST-------------- 864

  Fly   934 DLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVT 998
             |...|....|.....|..:|.......|.:|:       .|.|:    :|||...::....|..
Mouse   865 -LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAG 917

  Fly   999 G 999
            |
Mouse   918 G 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 14/55 (25%)
Cadherin_repeat 163..266 CDD:206637 36/102 (35%)
Cadherin_repeat 275..378 CDD:206637 30/111 (27%)
Cadherin_repeat 393..490 CDD:206637 38/97 (39%)
Cadherin_repeat 498..594 CDD:206637 30/101 (30%)
Cadherin_repeat 603..704 CDD:206637 33/114 (29%)
Cadherin_repeat 735..814 CDD:206637 17/110 (15%)
Cadherin 843..>907 CDD:394985 10/65 (15%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga1NP_291062.1 Cadherin_2 31..112 CDD:462413 8/36 (22%)
Cadherin_repeat 137..238 CDD:206637 36/105 (34%)
Cadherin_repeat 246..343 CDD:206637 30/112 (27%)
Cadherin_repeat 355..448 CDD:206637 38/95 (40%)
Cadherin_repeat 456..558 CDD:206637 31/102 (30%)
Cadherin_repeat 579..666 CDD:206637 28/91 (31%)
Cadherin_C_2 688..772 CDD:465139 17/94 (18%)
Cadherin_tail 810..>904 CDD:435046 24/141 (17%)
Blue background indicates that the domain is not in the aligned region.

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