DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhgb5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291055.1 Gene:Pcdhgb5 / 93702 MGIID:1935196 Length:926 Species:Mus musculus


Alignment Length:1002 Identity:255/1002 - (25%)
Similarity:423/1002 - (42%) Gaps:182/1002 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AVDTSADFEVLEGQPRGTTVGFIPTKPKFS--------YRFNEPPREFTLDPVTGEVKTNVVLDR 120
            |:.....:::.|..|.|:.||.:.....||        .|.:.....|::...:||:..:..|||
Mouse    28 ALSEQIRYKIPEEMPTGSVVGNLAKDLGFSVQELPTRKLRISSEKPYFSVSSESGELLVSSRLDR 92

  Fly   121 EGMRDH-----YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDAA 180
            |.:...     .:...::..|.....|.:::.|:||::|.|......:..||||..|||.:|:.|
Mouse    93 EQICGKKLVCALEFEAVAENPLNFYHVSVELEDINDHTPNFTHTFSELQISESAQPGTRFILEVA 157

  Fly   181 TDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISARDG 245
            .|||:..|.: ..|::   :....|.||......| ..|..|.....||||.:..|:|.::|.||
Mouse   158 EDADIALNSL-QNYKL---SPSPGFSLVNKEKQDG-RKYPELVLEKTLDREQQNYYRLVLTALDG 217

  Fly   246 GSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITYYLA 310
            |.||..|..::.:.:.|.|||||:|:...|.|.|.|...|||.|:.|.|:|.|.|.||:|:|...
Mouse   218 GDPPLSGTTELRIQVTDANDNPPVFNQEVYKVRLPENVPPGTTVLRVTATDKDEGVNSEISYSFH 282

  Fly   311 ETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTYVTVNLLDT 375
            .....|.:|.::|.|.|       |:|.......:.|.|  |.|||.|.  ...:..|.:|:.|.
Mouse   283 RAGQVFGLNSKSGEIIT-------QKTLDFEEIKEYSIV--VEARDGGG--LVAQCTVEINIQDE 336

  Fly   376 NDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNELGHFRLEEA 440
            ||:.|.|:.|     ..:..:.|||..||::|.:.:.|.|||.||..:.|:  .:|:....:..:
Mouse   337 NDNRPEITVR-----SLLEMIPENAPPGTLIALIKIHDGDSGENGEVNCRL--DDEVPFKIISSS 394

  Fly   441 ADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSE 505
            .:.:.:..:..||||...:||:|:.|.|:|.|..:::..:.:.|.||||:.|:|.::.|...::|
Mouse   395 KNSYKLVTDRALDRELTPEYNVTITATDRGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYIAE 459

  Fly   506 LAPTGSFVASITATDEDTGVNAQVHYDILSGN-ELK----WFSMDPLTGLIVTTGPLDREIRDTV 565
            ..|.|:.:|.::|:|.|.|.|..|.|.|::.: |.|    :.:::..:|::......|.|...:.
Mouse   460 NNPPGASIAQVSASDPDLGSNGHVSYSIIASDLEPKSLWSYVTVNAQSGVVFAQRAFDHEQLRSF 524

  Fly   566 ELSISARDGGPNPKFAYTQLKVIILDENDEAPQ--FSQREQNVTLGED-----APPQTIVALMTA 623
            :|::.|||.|.....|...::|::.|.||.||:  :...|.:.:...|     |.|..:|..:.|
Mouse   525 QLTLQARDHGSPTLSANVSMRVLVGDRNDNAPRVLYPALEPDGSALFDMVPRAAQPGYLVTKVVA 589

  Fly   624 TDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPLDREKMSQYEISVIARDQGAPTPQ 688
            .|.|.|.|..:::.:..:.:   |..|:|...||::.|.|.|..:..::..:.|..||.|.| |.
Mouse   590 VDADSGHNAWLSYHVLQASD---PGLFSLGLRTGEVRTARALGEKDAARQRLLVGVRDGGQP-PL 650

  Fly   689 SATATVWLNVADVNDNDPQFYPRHYIYSLAD---DDDDIKLKKEVEKERILLHVTASDKDDGDNA 750
            |||||:.|..||               ||.:   |..|..|..:.:.|.....|.|.       |
Mouse   651 SATATLLLVFAD---------------SLQEALPDLSDHSLPPDPQAELQFYLVVAL-------A 693

  Fly   751 LIEYRLESGGEGLFQLDA-RSGAISLRGDAPASMHW-----------KP-----------HYKLL 792
            |:..        ||.|.. .:.|:.||..:..|: |           ||           .|...
Mouse   694 LVSV--------LFLLAVILAIALRLRHSSSPSV-WNCFQPGFCSESKPVVFPNYSEGTLPYSYN 749

  Fly   793 VSARDAGQRRSQQDAIVEIVLKSKLEMLEC------GQA----QAGGYEFQMVEDHEQQRNSQPN 847
            :....||              |::...|:|      ||.    ::.|..|.:.:..|...:.:| 
Mouse   750 LYGAHAG--------------KTECNFLKCSEPLSSGQGLLCPESSGALFPLCDSSEPTSHPEP- 799

  Fly   848 REVGIVQVKSTNGKANSHIEYDIIQGDR-----AQNFRIDTRSGRITTARPLDREEQANYRLTIL 907
                      ...:|..:.::...|..|     :||       |..|...|.::.:....:..||
Mouse   800 ----------LTPQAPPNTDWRFSQAQRPGTSGSQN-------GDETGTWPNNQFDTEMLQAMIL 847

  Fly   908 ASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVRDR 972
            ||:|.::..:::               |...|....|.....|..:|.......|.:|:      
Mouse   848 ASASEAADGSST---------------LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI------ 891

  Fly   973 DAGVNSRISYSLTNNPNQQFRIGPVTG 999
             .|.|:    :|||...::....|..|
Mouse   892 -PGSNA----TLTNAAGKRDGKAPAGG 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 19/93 (20%)
Cadherin_repeat 163..266 CDD:206637 35/102 (34%)
Cadherin_repeat 275..378 CDD:206637 35/102 (34%)
Cadherin_repeat 393..490 CDD:206637 29/96 (30%)
Cadherin_repeat 498..594 CDD:206637 26/100 (26%)
Cadherin_repeat 603..704 CDD:206637 32/105 (30%)
Cadherin_repeat 735..814 CDD:206637 17/101 (17%)
Cadherin 843..>907 CDD:394985 9/68 (13%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhgb5NP_291055.1 Cadherin_2 32..112 CDD:462413 15/79 (19%)
Cadherin_repeat 139..238 CDD:206637 35/103 (34%)
Cadherin_repeat 246..339 CDD:206637 35/103 (34%)
Cadherin_repeat 352..444 CDD:206637 29/93 (31%)
Cadherin_repeat 452..554 CDD:206637 27/101 (27%)
Cadherin_repeat 574..658 CDD:206637 27/87 (31%)
Cadherin_C_2 683..764 CDD:465139 19/110 (17%)
Cadherin_tail 805..>899 CDD:435046 21/126 (17%)
Blue background indicates that the domain is not in the aligned region.

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