DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhgb2

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_291053.1 Gene:Pcdhgb2 / 93700 MGIID:1935170 Length:928 Species:Mus musculus


Alignment Length:1030 Identity:265/1030 - (25%)
Similarity:433/1030 - (42%) Gaps:195/1030 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RRSSSSSPSGEMQ----------SRAVDTSADFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE- 102
            ||.|.|.|:..:|          ..|:.....:.:.|...:.:.||.:......|.: |.|.|: 
Mouse     2 RRGSGSGPAWWLQVLSPFLLLLFHGALADQIRYSIPEELAKNSIVGNLARDLGLSVQ-NLPTRKL 65

  Fly   103 --------FTLDPVTGEVKTNVVLDRE---GMRD----HYDLVVLSSQPTYPIEVRIKVLDVNDN 152
                    ||::|.:|::.....:|||   |.:.    .:|:|  :.:|.....|.:.:.|||||
Mouse    66 RVSAEKDYFTVNPESGDLLVGDRIDREQVCGKQPQCVLEFDIV--AEKPLNIFHVAVILQDVNDN 128

  Fly   153 SPEFPEPSIAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDT 217
            :|.|.:..:.::..||...|....||.|.|.|.|.|.:...|     ..||::..||........
Mouse   129 APLFKQSEVDLNIGESTRPGKAFPLDPALDLDAGSNSLQKYY-----LTDNEYFEVTEKETPDGR 188

  Fly   218 SYLHLETTGNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNET 282
            .|..|.....||||....:||.::|.|||.|||.|..|:.:.:.|:|||||:|....::|:|.|.
Mouse   189 KYPELILKRFLDREEHNFHQLVLTAVDGGDPPRSGTTQIRIQVTDINDNPPMFSQDVFSVTLRED 253

  Fly   283 ALPGTPVVTVMASDNDLGDNSKITYYLAETEHQ----FTVNPETGVISTTERVNCPQQTNVKSSA 343
            ..||..|:.|.|:|.|.|.|::|||.....:.|    |.::..||.|:|.:.::         ..
Mouse   254 VPPGFSVLQVTATDQDEGVNAEITYAFHNVDEQVERIFNLDKRTGEITTKDNLD---------FE 309

  Fly   344 SQKSCVFTVFARDHGSPRQDGRTYVTVNLLDTNDHDP--IISFRFFPDGGKVATVDENAVNGTVV 406
            :.||....|.|:|.|.  ......:.|.:||.||..|  |::..|.|       :.|::..|||:
Mouse   310 TAKSYTLNVEAKDPGD--LASHCSIQVKILDENDCVPEVIVTSVFTP-------LPEDSPLGTVI 365

  Fly   407 AAVAVKDSDSGLNGRTSVRIVSGNELGHFRLEEAADLHIVRVNGVLDREEIGKYNLTVVAMDQGT 471
            |.:..:|.|||.||.....:: ||| |......:.:.:.:..:..||||.|.:||:|:||.|:|.
Mouse   366 ALIKTRDRDSGENGDVYCHVL-GNE-GFVLKSSSKNYYKLVTDRTLDREAIPEYNVTIVAADRGK 428

  Fly   472 PARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILSG 536
            |..::...:.:.::||||:.|||.::.|...::|..|.|:.:|.::|:|.|.|.|..:.|.|:: 
Mouse   429 PPLSSNVIITLHISDVNDNAPVFHQASYLVHVAENNPPGTSIAQVSASDPDLGSNGLISYSIIA- 492

  Fly   537 NELK------WFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDE 595
            ::|:      :.|::..:|::......|.|...:.:|::.|||.|.....|...::|::.|.||.
Mouse   493 SDLEPRALSSFVSVNQDSGVVFAQRAFDHEQLRSFQLTLQARDHGSPTLSANVSMRVLVGDRNDN 557

  Fly   596 APQFSQREQNVTLGED-----------APPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQ 649
            ||    |....||..|           |.|..:|..:.|.|.|.|.|..:::.:..:.:   |..
Mouse   558 AP----RVLYPTLEPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASD---PGL 615

  Fly   650 FALDALTGQLTTRRPLDREKMSQYEISVIARDQGAPTPQSATATVWLNVA--------DVND--- 703
            |:|...||::.|.|.|.....::..:.|..||.|.| |.|||||:.|..|        |::|   
Mouse   616 FSLGLRTGEVRTARALGDRDSARQRLLVAVRDGGQP-PLSATATLHLIFADSLQEVLPDLSDDPL 679

  Fly   704 -NDPQFYPRHY-IYSLADDDDDIKLKKEVEKERILLHVTASDKDDGDNALIEYRL----ESGGEG 762
             :|||...:.| :.:||           :.....||.|..:         |..||    .|...|
Mouse   680 PSDPQSELQFYLVVALA-----------LISVLFLLSVILA---------IALRLRHSSRSAAWG 724

  Fly   763 LFQLDARSGAIS------LRGDAPASMHWKPHYKLLVSARDAGQRRSQQDAIVEIVLKSKLEMLE 821
            .||....|...:      ..|..|.|      |.:.::::.|....:..:...|:..:..|    
Mouse   725 CFQPGLSSNLATGVLPNYNEGTLPYS------YNVCIASQSAKTEFNFLNVTPEVAPQDLL---- 779

  Fly   822 CGQ-----AQAGGYEFQMVEDHEQQRNSQPNREVGIVQVK--STNGKANSHIEYDIIQGDRAQNF 879
            ||.     ...|..:...|.| ...:.:.||.:....|.:  .|:|..|         ||.    
Mouse   780 CGDDSWVPGTLGDTDVPFVSD-SISKQAPPNTDWRFSQAQRPGTSGSQN---------GDE---- 830

  Fly   880 RIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFAL 944
                     |...|.::.:....:..||||:|.::..:::               |...|....|
Mouse   831 ---------TGTWPNNQFDTEMLQAMILASASEAADGSST---------------LGGGAGTMGL 871

  Fly   945 DRESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            .....|..:|.......|.:|:       .|.|:    :|||...::....|..|
Mouse   872 SARYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 915

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 22/96 (23%)
Cadherin_repeat 163..266 CDD:206637 34/102 (33%)
Cadherin_repeat 275..378 CDD:206637 31/106 (29%)
Cadherin_repeat 393..490 CDD:206637 31/96 (32%)
Cadherin_repeat 498..594 CDD:206637 25/101 (25%)
Cadherin_repeat 603..704 CDD:206637 34/123 (28%)
Cadherin_repeat 735..814 CDD:206637 17/88 (19%)
Cadherin 843..>907 CDD:394985 10/65 (15%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhgb2NP_291053.1 Cadherin_2 31..111 CDD:462413 17/82 (21%)
Cadherin_repeat 139..237 CDD:206637 34/102 (33%)
Cadherin_repeat 245..341 CDD:206637 30/106 (28%)
Cadherin_repeat 355..447 CDD:206637 31/93 (33%)
Cadherin_repeat 455..557 CDD:206637 26/102 (25%)
Cadherin_repeat 577..661 CDD:206637 27/87 (31%)
Cadherin_C_2 686..768 CDD:465139 19/107 (18%)
Cadherin_tail 807..>901 CDD:435046 24/141 (17%)
Blue background indicates that the domain is not in the aligned region.

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