DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and PCDHA5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_061731.1 Gene:PCDHA5 / 56143 HGNCID:8671 Length:936 Species:Homo sapiens


Alignment Length:622 Identity:191/622 - (30%)
Similarity:301/622 - (48%) Gaps:63/622 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 GEVKTNVVLDREGM-------RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSE 167
            |.:..|..:|||.:       ..|.:::|  .:|.....|.:.|.|:|||.|.|......:...|
Human    81 GILFVNSRIDREELCRRRAECSIHLEVIV--D
RPLQVFHVEVAVKDINDNPPRFSRQEQRLFILE 143

  Fly   168 SATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRES 232
            |....:|..|:.|:|.|:|.|... :|.:   |.:..|.|....|.. :|::|.|....:||||.
Human   144 SRMPDSRFPLEGASDLDIGANAQL-RYRL---NPNEYFDLDVKTNEE-ETNFLELVLRKSLDREE 203

  Fly   233 RGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDN 297
            ...::|.:.|.|||.|...|.:|:.:.:||.|||.|.||.|.|||.|.|.|..||.|:.:.|||.
Human   204 TQEHRLLVIATDGGKPELTGTVQLLINVLDANDN
APEFDKSIYNVRLLENAPSGTLVIKLNASDA 268

  Fly   298 DLGDNSKITYY-----LAETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDH 357
            |.|.|.:|.|:     |.:.:.:|.:|..||.|.....::.....:.:         ..:.|.|.
Human   269 DEGINKEIVYFFSNLVLDDVKSKFIINSNTGEIKVNGELDYEDYNSYE---------INIDAMDK 324

  Fly   358 GSPRQDGRTYVTVNLLDTNDHDP--IISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNG 420
            .:....|...|.|.|||.||:.|  .|:..|.|       |.|:|...||:|.::|.|.|||.||
Human   325 STFPLSGHCKVVVKLLDVNDN
TPEMAITTLFLP-------VKEDAPLSTVIALISVSDRDSGANG 382

  Fly   421 RTSVRIVSGNELGH--FRLEEA-ADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLII 482
            :.:..:     :.|  |:|... .:.:.:.::..||||.:..|.|.|.|.|.|:|:...||.:.:
Human   383 QVTCSL-----MPHVPFKLVSTFKNYYSLVLDSALDRESVSVYELVVTARDGGSPSLWATASVSV 442

  Fly   483 DVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILS---GNE--LKWF 542
            :|.||||:.|.|.:.:|:..:.|..|.|..:.:::|.|.|...||.|.|.::.   |..  ..:.
Human   443 EVADVNDN
APAFAQPQYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVGERPLSSYV 507

  Fly   543 SMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNVT 607
            |:...:|.:....|||.|..:.::..:||||.|..|..:...|:|.:|||||.||.........|
Human   508 SVHAESGKVYALQPLDHEEVELLQFQVSARDAGVPPLGSNVTLQVFVLDENDN
APALLVPRVGGT 572

  Fly   608 LG--EDAPPQT-----IVALMTATDHDQGTNGSVTFAL--APSVERLYPLQFALDALTGQLTTRR 663
            .|  .:..|::     :||.:.|.|.|.|.|..:::.|  ||...|   :.|.:...||:::|.|
Human   573 GGAVSELVPRSVGAGHVVAKVRAVDPDSGYNAWLSYELQPAPGSAR---IPFRVGLYTGEISTTR 634

  Fly   664 PLDREKMSQYEISVIARDQGAPTPQSATATVWLNVAD 700
            .||..:..::.:.|:.:|.|.| |.:|||||.:::.:
Human   635 SLDETEAPRHRLLVLVKDHGEP-PLTATATVLVSLVE 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 12/48 (25%)
Cadherin_repeat 163..266 CDD:206637 32/102 (31%)
Cadherin_repeat 275..378 CDD:206637 32/107 (30%)
Cadherin_repeat 393..490 CDD:206637 33/99 (33%)
Cadherin_repeat 498..594 CDD:206637 29/100 (29%)
Cadherin_repeat 603..704 CDD:206637 31/107 (29%)
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
PCDHA5NP_061731.1 Cadherin_2 29..110 CDD:462413 7/30 (23%)
Cadherin_repeat 136..237 CDD:206637 32/105 (30%)
Cadherin_repeat 245..345 CDD:206637 32/108 (30%)
Cadherin_repeat 358..450 CDD:206637 33/96 (34%)
Cadherin_repeat 458..560 CDD:206637 30/101 (30%)
Cadherin_repeat 580..669 CDD:206637 29/92 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 759..793
5 X 4 AA repeats of P-X-X-P 773..890
Cadherin_tail 786..902 CDD:435046
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 816..936
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.