DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and PCDH8

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_002581.2 Gene:PCDH8 / 5100 HGNCID:8660 Length:1070 Species:Homo sapiens


Alignment Length:710 Identity:209/710 - (29%)
Similarity:314/710 - (44%) Gaps:107/710 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 QSRAVDTSADFEVLEGQPRGTTVGFI----------PTKPKFSYRFNEP---PREFTLDPVTGEV 112
            ||:.|..|. ||  |..| ||.:|.:          .|..:...:||..   .||.......|:.
Human    28 QSKTVRYST-FE--EDAP-GTVIGTLAEDLHMKVSGDTSFRLMKQFNSSLLRVREGDGQLTVGDA 88

  Fly   113 KTNVVLDREGMRDH-------YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESAT 170
            .    ||||.:...       :|:|..|.:....:.|.::|.||||::|.||...|.:..||.|.
Human    89 G----LDRERLCGQAPQCVLAFDVVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQIPVEVSEGAA 149

  Fly   171 SGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFR--LVTTANPSGDTSYLHLETTGNLDRESR 233
            .|||:.|:...|.|||.||:   ..:......:.||  |.|.|:.:.....:.|:   .|||||:
Human   150 VGTRIPLEVPVDEDVGANGL---QTVRLAEPHSPFRVELQTRADGAQCADLVLLQ---ELDRESQ 208

  Fly   234 GSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDY-NVSLNETALPGTPVVTVMASDN 297
            .:|.|.:.|:|||.|||.....::|.:||.||:.|.|..... .|.|.|.|..|:.::.:.|:|.
Human   209 AAYSLELVAQDGGRPPRSATAALSVRVLDANDHSPAFPQGAVAEVELAEDAPVGSLLLDLDAADP 273

  Fly   298 DLGDNSKITYYLA-----ETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDH 357
            |.|.|..:.:...     |....|.::|.:|.::....|:..:|...:         ..|.|:|.
Human   274 DEGPNGDVVFAFGARTPPEARRLFRLDPRSGRLTLAGPVDYERQDTYE---------LDVRAQDR 329

  Fly   358 GSPRQDGRTYVTVNLLDTNDHDPIISFRFF---------------------------------PD 389
            |...:.....|.|.:.|.||:.|.|:....                                 |:
Human   330 GPGPRAATCKVIVRIRDVNDNAPDIAITPLAAPGAPATSPFAAAAAAAALGGADASSPAGAGTPE 394

  Fly   390 GGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNELGHFRLEEA-ADLHIVRVNGVLD 453
            .|..:.|.|.|...::||.|:..|.|||.||:....:. |:|  ||||:.| |..::|.....||
Human   395 AGATSLVPEGAARESLVALVSTSDRDSGANGQVRCALY-GHE--HFRLQPAYAGSYLVVTAASLD 456

  Fly   454 REEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITA 518
            ||.|.:||||:||.|:|.|...|.....:.|.|.||:.|:|.:..|...:.|..|.|:::|::.|
Human   457 RERIAEYNLTLVAEDRGAPPLRTVRPYTVRVGDENDNAPLFTRPVYEVSVRENNPPGAYLATVAA 521

  Fly   519 TDEDTGVNAQVHYDIL-------SGNELKWFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGP 576
            .|.|.|.|.||.|.:|       .|....:.|:||.||.|......|.|....:::.|.|.||| 
Human   522 RDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGAIYALRSFDYETLRQLDVRIQASDGG- 585

  Fly   577 NPKFAYTQL-KVIILDENDEAPQF-----SQREQNVTLGEDAPPQTIVALMTATDHDQGTNGSVT 635
            :|:.:.:.| :|.:||:||.||..     :.....|.:.......|:||.:.|.|.|:|.||.:.
Human   586 SPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVPGRTAKDTVVARVQARDADEGANGELA 650

  Fly   636 FALAPSVERLYPLQFALDALTGQLTTRRPLDREKMSQ-YEISVIARDQGAPTPQSATATV 694
            |.|.....|   ..||:...||::.....|.:|...: :...::..|.|.| |.:.||||
Human   651 FELQQQEPR---EAFAIGRRTGEILLTGDLSQEPPGRVFRALLVISDGGRP-PLTTTATV 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 25/100 (25%)
Cadherin_repeat 163..266 CDD:206637 37/104 (36%)
Cadherin_repeat 275..378 CDD:206637 24/108 (22%)
Cadherin_repeat 393..490 CDD:206637 39/97 (40%)
Cadherin_repeat 498..594 CDD:206637 33/103 (32%)
Cadherin_repeat 603..704 CDD:206637 27/93 (29%)
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
PCDH8NP_002581.2 Cadherin_2 31..109 CDD:462413 20/85 (24%)
Cadherin_repeat 139..241 CDD:206637 38/107 (36%)
Cadherin_repeat 252..350 CDD:206637 24/106 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..401 2/18 (11%)
Cadherin_repeat 401..493 CDD:206637 39/94 (41%)
Cadherin_repeat 501..605 CDD:206637 34/104 (33%)
Cadherin_repeat 618..711 CDD:206637 27/93 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 715..736
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 779..861
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 907..929
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1045..1070
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.