DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and PCDHGC3

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_002579.2 Gene:PCDHGC3 / 5098 HGNCID:8716 Length:934 Species:Homo sapiens


Alignment Length:722 Identity:207/722 - (28%)
Similarity:332/722 - (45%) Gaps:92/722 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AGRESLCQTGDTKLELLAPRGRSYATTYEQYAAFPRRRSSSSSPSGEMQSRAVD----TSADFEV 73
            |.|..|..||.....||.....:.|:|...| ..|..|....:....:.:..:|    ::..|.|
Human     5 AWRSGLVSTGRVVGVLLLLGALNKASTVIHY-EIPEEREKGFAVGNVVANLGLDLGSLSARRFRV 68

  Fly    74 LEGQPRGTTVGFIPTKPKFSYRFNEPPREFTLDPVTGEVKTNVVLDREGM-------RDHYDLVV 131
            :.|..|               ||.|..||      |||:..|..||||.:       ....:|||
Human    69 VSGASR---------------RFFEVNRE------TGEMFVNDRLDREELCGTLPSCTVTLELVV 112

  Fly   132 LSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDAATDADVGENGVTDQYEI 196
            .:....:.:||.|:  |:|||:|.||...:.:..||:...|||..|::|.|.|||.|.: ..||:
Human   113 ENPLELFSVEVVIQ--DINDNNPAFPTQEMKLEISEAVAPGTRFPLESAHDPDVGSNSL-QTYEL 174

  Fly   197 VAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTIL 261
            ..    |::..:........|.|..|.....||||...|.||.::|.|||:|.....|.:::.:|
Human   175 SR----NEYFALRVQTREDSTKYAELVLERALDREREPSLQLVLTALDGGTPALSASLPIHIKVL 235

  Fly   262 DVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITYYL-----AETEHQFTVNPE 321
            |.|||.|:|:.|.|...:.|.|..||.||.|:|:|.|.|.|.:|.|..     |.....|.::..
Human   236 DANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLV 300

  Fly   322 TGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRF 386
            ||:::...|::. :.|.:.....|        |:|.|:..:.....|.|.::|.||:.|.|:.. 
Human   301 TGMLTIKGRLDF-EDTKLHEIYIQ--------AKDKGANPEGAHCKVLVEVVDVNDNAPEITVT- 355

  Fly   387 FPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSG-------NELGHFRLEEAADLH 444
                ...:.|.|:|..|||:|.::|.|.|:|.||..:..:..|       :...:|.|:.:||  
Human   356 ----SVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSAD-- 414

  Fly   445 IVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPT 509
                   ||||.:.:|||::.|.|.|||:.:....:.:.|:|:||:.|...:|.|...:.|....
Human   415 -------LDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDINDNPPQSSQSSYDVYIEENNLP 472

  Fly   510 GSFVASITATDEDTGVNAQVHYDIL-SGNEL----KWFSMDPLTGLIVTTGPLDREIRDTVELSI 569
            |:.:.:::..|.|...||::.:.:| .|.|.    ::|:::...|::.:..|||.|.|...||:.
Human   473 GAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTA 537

  Fly   570 SARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNVTLGEDAPPQT----IVALMTATDHDQGT 630
            ...|||.........:.:.:.|.||.|||........:..|..|..|    :|:.:...|.|.|.
Human   538 HISDGGTPVLATNISVNIFVTDRNDNAPQVLYPRPGGSSVEMLPRGTSAGHLVSRVVGWDADAGH 602

  Fly   631 NGSVTFALAPSVERLYPLQ--FALDALTGQLTTRRPLDREKMSQYEISVIARDQGAPTPQSATAT 693
            |..::::|..|     |.|  ||:...|||::|.||:......:..::|:.:|.|.|: .|.|||
Human   603 NAWLSYSLLGS-----PNQSLFAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPS-LSTTAT 661

  Fly   694 VWLNVAD 700
            :.::|.:
Human   662 LTVSVTE 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 25/87 (29%)
Cadherin_repeat 163..266 CDD:206637 34/102 (33%)
Cadherin_repeat 275..378 CDD:206637 29/107 (27%)
Cadherin_repeat 393..490 CDD:206637 33/103 (32%)
Cadherin_repeat 498..594 CDD:206637 23/100 (23%)
Cadherin_repeat 603..704 CDD:206637 29/104 (28%)
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
PCDHGC3NP_002579.2 Cadherin_2 33..114 CDD:462413 24/102 (24%)
Cadherin_repeat 139..240 CDD:206637 34/105 (32%)
Cadherin_repeat 249..348 CDD:206637 29/107 (27%)
Cadherin_repeat 361..453 CDD:206637 33/100 (33%)
Cadherin_repeat 461..563 CDD:206637 24/101 (24%)
Cadherin_repeat 580..667 CDD:206637 27/92 (29%)
Cadherin_C_2 689..770 CDD:465139
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 804..843
Cadherin_tail 813..>907 CDD:435046
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 904..934
Blue background indicates that the domain is not in the aligned region.

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