DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and pcdh15b

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:XP_073773689.1 Gene:pcdh15b / 503521 ZFINID:ZDB-GENE-050214-1 Length:1961 Species:Danio rerio


Alignment Length:2292 Identity:539/2292 - (23%)
Similarity:858/2292 - (37%) Gaps:607/2292 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1773 ILSTAAELDREAGPEEYEVEVYAIALGGQPRTSRTKVRVTVLDKNDSPPQFLDTPFVYNVSEDLQ 1837
            :|.|||...:::  |:::.|...::..|.|.|      :..:|: .||...|       :.|::|
Zfish    20 LLLTAASYSQDS--EDWQYEECKLSRTGPPAT------IVAIDE-QSPNGTL-------LVENMQ 68

  Fly  1838 IGHTISTLRAHDPDTLGSVTFLLMDGHDGKFLLEPSTGKLILNDT---LDRETKSKYELRIRVSD 1899
            |..     ||.|||.  :::..|.|.:|...:|:|...:|.||.|   |||:..| |...|.|. 
Zfish    69 ING-----RAEDPDR--TISLSLRDNNDYWVILDPVKQRLYLNSTGRVLDRDPPS-YIQSIVVQ- 124

  Fly  1900 GVQYT-EAYAT-------IQVSDTNDNPPLFEDTVYSFDIPENAQRGYQV-----GQIVARDADL 1951
             ||.| |...|       |.|.|.|||.|.|:...|...:.|....|..:     |...|.|.|.
Zfish   125 -VQCTNELVGTVILHEVRIVVRDRNDNAPRFQQPRYYVAVNELTPVGTTIFSGFTGNNGAVDIDD 188

  Fly  1952 GQNAQLSYGVV----SDWANDVFSLNPQT--GMLTLTARLDYEEVQHYILIVQAQD---NGQPSL 2007
            |.|.|:.|.:.    ....|..|.: |.|  |.:.|..||:|||:..|::|:||.|   |.:..|
Zfish   189 GPNGQIEYTIQYNPRDPTTNRTFDI-PLTLSGSVVLRERLNYEEITRYLVIIQANDRAPNPKDRL 252

  Fly  2008 STTITVYCNVLDLNDNAPIFDPMSYSSEVFENVPIATEVVTVSAKDIDSGNNGLIEYSITAGDVD 2072
            :.|.|:..:|||.:|..|:|.|.|......:..|:......:...|....|...:...|.|.|.|
Zfish   253 TATTTLTVDVLDGDDLGPMFLPCSLVDNTRDCKPLTYRASILELTDPSRVNPVNVTPPIQAVDQD 317

  Fly  2073 SEFGIDSNGTIRTRRNL----DREHRSTYTLTVTARDCADEF----ASFSELEETQLKLKYRSPR 2129
                          ||:    ||. ...|::.:...:...||    .|.:||:    .||..|..
Zfish   318 --------------RNIQPPSDRP-GILYSILIGKPETYGEFFWMNRSTAELQ----LLKAISRE 363

  Fly  2130 KYQQTRQEFLAHQKQ-QRLSSTVKVTILIKDVNDEVPVF-ISANETAIMENVAINTVV------- 2185
            |||.......|.|.. ..|.:...:.|.:.|.|::.|.| ::.....|.|:..:.|.:       
Zfish   364 KYQHFDLVIKAEQDNGHPLPAFANLHIEVLDENNQAPYFQVATYHGFISESAPLGTTISSSANLS 428

  Fly  2186 --IAVKAVDNDEGRNGYIDYLMKEARDEDMGQSDPL-PFSLNPTDG-----------QLRVVDAL 2236
              :|:..:|||          ::|.:       ||: ..||:..:|           .|.::..:
Zfish   429 TPLAIIVLDND----------IEETK-------DPMVRISLDNYNGIFAVTAGGIVRYLTLLRPV 476

  Fly  2237 DRELRSSYLLNITARDRGEPPQSTESQLLIRILDENDNSPVFDPKQYSASVAENASIGAMVLQVS 2301
            |.|.:.:|...:.|.|..:  :|....:.|.::|.|||:|.|....|..:|..:...|..|||::
Zfish   477 DHEEQPTYAFTMIASDGVQ--ESAPVTINITVIDANDNTPTFPNVSYGVNVYTDMQPGDPVLQLT 539

  Fly  2302 ATDVDEGANGRIRYSIVLGDQNHDFSISEDTGVVRVAKNLNYERLSRYSLTVRAEDCALENPAGD 2366
            |.|.|:|.||.:.|.|:.|||.| |:|::.|||:.|..::|......|:|||||.|      .|.
Zfish   540 ALDADDGPNGLVSYKILAGDQGH-FTINDCTGVITVLPSVNLTVGRSYALTVRATD------NGP 597

  Fly  2367 TAELTINILDI--------NDNRPTFLDSPYLARVMENTVPPNGGYVLTVNAYDADTPPLNSQVR 2423
            ||:...:|..:        |.:.|.|....|...:.|  ....|..:|.:.|.|.:..|    |.
Zfish   598 TAQRRSSITTVYIEVLPPNNQSPPRFPQLVYSLEISE--AMRTGATLLNIQATDREKDP----VT 656

  Fly  2424 YFLKEGD-SDLFRINASSGDIALLKPLDREQQSEYTLTLVAMDTGSPPLTGTGIVRVEVQDINDN 2487
            |.:::|| :::|.::.:||.:.|.|.||||....||||:.|.| |.|..|.|..|.:.|.|:|||
Zfish   657 YSIQKGDPNNVFEVSQTSGLLLLAKTLDREITDHYTLTVTASD-GKPDGTSTTTVNIAVTDVNDN 720

  Fly  2488 DPVFE-LQSYHATVRENLPSGTHVLTPRATDKDEGLNAKLRFNLLGEHMHRFHIDSETGEISTAT 2551
            ||.|: |...:.||:|. .:...|...:|||.|.|:|.::|:.|: .:...|.| |..|.|.||.
Zfish   721 DPEFDPLLPLNLTVQEE-EANAFVGQVKATDLDLGINGQVRYRLV-SYPDLFRI-SPNGSIFTAM 782

  Fly  2552 TLDREETSVYHLTLMAQDSSITEPRASSVNLTISVSDVNDNIPKFDSTTYNVAVPERISKGEFVF 2616
            .|||||.:.|.|.:.|.|.: .:||.:::.|:|:|.||:||.|.|....|:..:||....|..:.
Zfish   783 PLDREERAQYDLIVQASDGA-KDPRRTTITLSITVLDVDDNSPVFSPPAYHATLPENSPVGTVIL 846

  Fly  2617 GARALDLDDGENAVVHYTISGRD-QHYFDINTKTGVVSTKLELKTKTKSHDDLTYTIVISAMDQG 2680
            ...|||.|...|  |.|.|..:: :..|.:|:.||.:.....|..:....:..|.|.|:.|:|.|
Zfish   847 NISALDPDLDAN--VTYRIRTKEARELFAVNSLTGELKVLRSLDFEKLLPNATTQTFVVEALDGG 909

  Fly  2681 EQSLSSKAELTVILRPPELFPTFAYMANSHFAMSEDVRPGKMITKVSATSPKKGLVGKIRYAIAG 2745
            .                                      |||                       
Zfish   910 S--------------------------------------GKM----------------------- 913

  Fly  2746 GIMGDSLRVDPNSGLLSVGQDGLDYELTHLYEIWIEAADGDTPSLRSVTLITLNVTDANDNAPVM 2810
                                                     .|.|.||   |:.|.|.||..||.
Zfish   914 -----------------------------------------PPGLASV---TVTVLDMNDFPPVF 934

  Fly  2811 EQLIYNAEVLEEESPPQLIAVVKASDRDSGDNGNVIYRLQNDFD--------GTFEITE-SGEIY 2866
            .|.:|...|........::..|.|.|.|  ..|....|:....|        ..|::.| ||.|:
Zfish   935 SQTLYRGMVAPNAVKGTIVTAVHAEDLD--PPGTAASRVHYKADLEQFPYSTSIFDVEENSGNIF 997

  Fly  2867 TRMRLDREEIGDYAFVVEAVDQGVPHMTGTASVLLHLLDKNDNPPKFTRLFSLN------VTENA 2925
            ||:.|:.|....::..|.|.|.|.|.....:.|.:.:|.     |....:|:..      |:|||
Zfish   998 TRVNLNEEPNTKFSLAVIAYDDGEPMKFNKSLVEITVLQ-----PSIIPVFTQEEYRFAPVSENA 1057

  Fly  2926 EIGSFVIRVTSSDLDLGANANASYSFSE-NPGEKFRIEPQSGNITVAGHLDREQQDEYILKVVAS 2989
            .:|:    |....|....|....||..| |.|.:|.:...:|.|:.|..||.|....|:|:|.|.
Zfish  1058 PVGT----VAGVILAAAINQTIVYSIIEGNEGGEFVVNNNTGVISTAKPLDYESNSSYVLRVEAD 1118

  Fly  2990 D----------GAWRAETPITITIQDQNDNAPEFEHSFYSFSFPELQQSIALVGQIIATDRDKQG 3044
            .          .|......:.|.:||:||:.|.|...||.....|..::...|.|:.|.|:| .|
Zfish  1119 SMRVVSSNLRAPAKSNTAKVFIDVQDENDHPPVFTKPFYLGGVAEDAKTFTSVLQVQALDKD-TG 1182

  Fly  3045 PNSVISYSLQQPSPM-----FSIDPATGEVFSKKAVRFKHSQYVRSPENMYALTVLATDNGKPPL 3104
            ..|.:.|.|..|...     |.|:|.||.:  |.|:.:::.:     .:.:...|:||||....|
Zfish  1183 NYSAMLYRLIIPPTTDGKDGFVIEPFTGVI--KTAIMYRNMR-----RSYFKFDVVATDNYGEGL 1240

  Fly  3105 YSECLVNINIVDAHNNPPKFEQAEYLAPLPQDAVRGQRIVRVHANDKQDLGTNEMDYSLMTFNLS 3169
            .|...|.:::|                                         |::|..::..|  
Zfish  1241 SSSAQVVVSVV-----------------------------------------NQLDMQVVVSN-- 1262

  Fly  3170 SIFSVGRHDGWITLVKPIQVPPNTRYELVVRATDRGVPPQSDETRVVIVVTGENMDTPRFSVNSY 3234
                          |.|..|..|.  :.::...:|.|..|....:||:    |::...||. :.|
Zfish  1263 --------------VPPTVVEQNK--DRLIGILERYVQDQIPGAKVVM----ESIGARRFG-DGY 1306

  Fly  3235 QVIVPENEPVGSTILTVGATDDDTGPNGMLR---YSISGG---NERQDFSVDERTGGIVIQQQLD 3293
                 |.|....:.|.|.|.|..|. ..:.|   :....|   :..::|......||.:::.:..
Zfish  1307 -----EQEDYTKSDLMVYAIDPLTN-RALSRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRTP 1365

  Fly  3294 YDLIQEYHLNITVQDLGYHPLSSVAMLTIILTDVNDNPPVFNHKEYHCYIPENKPVGTFVFQAHA 3358
             |:::.  :...|..:||...:.:|:..||:.               |.||   .:...:.....
Zfish  1366 -DVVES--VTRAVHSVGYTEGALLALAVIIIL---------------CCIP---AILIVIITYRQ 1409

  Fly  3359 ADKDSPKNAIIHYAFLPSGPDRHFFIMNQSNGTISSAVSFDYEERRIYTLQIKAKNPDSSMESYA 3423
            ...:..|.|.|..| ||:|         :|.|..::.:   |||.           .||:|..|.
Zfish  1410 RQAECAKTARIQMA-LPTG---------KSGGAATNNL---YEEL-----------GDSTMRGYG 1450

  Fly  3424 NLYVHVLGVNEFYPQFLQPVFHFDVSETSAVGTRVGAVQATDKDSGEDGRVYYLLVGSSNDKGFR 3488
            :.....|    ..|..|:|.   ::|..|.:            |.|:|   ||.....:.:.|:.
Zfish  1451 HQEQQQL----LRPSLLRPE---ELSMESGI------------DPGQD---YYTQDYYNYEHGYD 1493

  Fly  3489 IDTNTGLIYVARHLDRETQNRVVLTVMAKNYGSIRGND---------TDEAQVI-----ISIQDG 3539
            :..     |.:|      :..:..:.|...||.:...|         ..|.:|.     ::...|
Zfish  1494 LPQ-----YGSR------RKLISPSGMYDEYGEVIMEDDGSYYYSPHESEGEVARQGRRLAQHPG 1547

  Fly  3540 NDPP------------------EFIKHYYTSTIS---------EAAPV-------GTKVTTVKAI 3570
            ..||                  :.|.|.|:|..|         .:||.       ..::..:...
Zfish  1548 KAPPPNLPKLAFGDLPPRLGAADGITHPYSSKASTKLGQMFDRRSAPAPFHLPWKNNRIFPIVGP 1612

  Fly  3571 DK------DVRTQNNQFSYSIINGNLKQSFKID---VQTGEISTASRLDREETSTYNLVIGAIDT 3626
            ::      |.:....|.|.|:.||..     ||   .||.|..|:::....:..:...::..:.|
Zfish  1613 EQKEGSTDDFKPTRMQHSNSVDNGVF-----IDGSYFQTKEALTSAKTRLGKVLSQMNILKTMQT 1672

  Fly  3627 GLPPQTGSATVHIELEDVNDNGPTFTPEGLNGYISENE----PAGTSIMTLIASDPDLPRN---- 3683
                |..|.:...|..|..:||....|..||.  :|.|    | |.::.:.|.|..:..|:    
Zfish  1673 ----QKNSVSSISEAVDHRNNGSFSIPWPLNR--TERELQRIP-GAAMESEIESREERSRSREDI 1730

  Fly  3684 -----GGPFT-------YQLIGGKHKSWLSVDRNSGVVRSTTSFDREM-----TPILEAIIEVED 3731
                 .|..|       ||...|.|.|.|..|.:    :..:.||.:.     |.:.:..||.:.
Zfish  1731 IRQSYTGSATSFKHNHPYQPKEGAHMSSLDSDDD----QDQSPFDSDWESQTNTQLDDTEIESKT 1791

  Fly  3732 SGKPKQKSQHLLTITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRLQ 3796
            ....:.::.......::.:.:|.|...:...:.|........::|                 .::
Zfish  1792 ETDSETETDQETDTEIISETENESGQEAAKESSSEEGSSGKESIK-----------------SVR 1839

  Fly  3797 KNPAQSQLQLAIPRACDLITTSHTTPIASVFSYTGNDGKHGDVSS----KVSVAFQSFNNETLAN 3857
            .:|::..           .|||.:|.       :.:|.:.||..|    .:|...:|::.|...|
Zfish  1840 SSPSRQN-----------TTTSESTK-------SRDDLEEGDSESHSKNTMSSRSRSYSPERRRN 1886

  Fly  3858 SVSIMVRNMTAYHFLAN 3874
            |         ::|.|:|
Zfish  1887 S---------SFHSLSN 1894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637 10/44 (23%)
Cadherin_repeat 1827..1918 CDD:206637 33/101 (33%)
Cadherin_repeat 1926..2023 CDD:206637 34/110 (31%)
Cadherin_repeat 2031..2162 CDD:206637 29/139 (21%)
Cadherin_repeat 2172..2274 CDD:206637 23/122 (19%)
Cadherin_repeat 2282..2380 CDD:206637 37/105 (35%)
Cadherin_repeat 2388..2487 CDD:206637 34/99 (34%)
Cadherin_repeat 2495..2592 CDD:206637 35/96 (36%)
Cadherin_repeat 2600..2694 CDD:206637 23/94 (24%)
Cadherin_repeat 2710..2806 CDD:206637 11/95 (12%)
Cadherin_repeat 2814..2909 CDD:206637 25/103 (24%)
Cadherin_repeat 2917..3009 CDD:206637 30/108 (28%)
Cadherin 3018..3114 CDD:394985 27/100 (27%)
Cadherin 3129..3220 CDD:394985 12/90 (13%)
Cadherin_repeat 3233..3330 CDD:206637 20/102 (20%)
Cadherin_repeat 3338..3434 CDD:206637 20/95 (21%)
Cadherin_repeat 3443..3541 CDD:206637 17/111 (15%)
Cadherin_repeat 3550..3647 CDD:206637 22/121 (18%)
Cadherin_repeat 3657..3753 CDD:206637 22/120 (18%)
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
pcdh15bXP_073773689.1 None
Blue background indicates that the domain is not in the aligned region.

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