DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga2

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001032216.1 Gene:Pcdhga2 / 498846 RGDID:1587259 Length:931 Species:Rattus norvegicus


Alignment Length:968 Identity:266/968 - (27%)
Similarity:414/968 - (42%) Gaps:195/968 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FTLDPVTGEVKTNVVLDREGM-------RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEF--PE 158
            |.|:|.:|.:.|...:|||.:       ..:::|::......|.:||  :|:|||||:|.|  .|
  Rat    75 FALNPRSGSLVTAGRIDREELCAQSTPCLVNFNLLMEDKLTIYSVEV--EVIDVNDNAPRFGVEE 137

  Fly   159 PSIAISFSESATSGTRLLLDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLE 223
            |.:.|  ||:.|.|.|:.|.:|.||||||| ...:|::   |.::.|.|.......|: .|..|.
  Rat   138 PELKI--SETTTPGFRIPLKSAHDADVGEN-TLQKYKL---NSNDHFSLDVRTGADGN-KYPELV 195

  Fly   224 TTGNLDRESRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTP 288
            ....||||....:.|.:.|.|.|.|.|....::.|.:||||||.|:|...:|.||:.|....||.
  Rat   196 LERALDREEEAVHHLVLVASDRGKPVRSSTCRIRVKVLDVNDNAPVFTQPEYRVSVPENMPVGTR 260

  Fly   289 VVTVMASDNDLGDNSKITYYL----AETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCV 349
            ::||.|:|.|.|.|:::||:|    .|:...|.:...:|.|:.|           ||...:|:..
  Rat   261 ILTVTATDTDEGYNAQVTYFLERVPGESTDAFELKSTSGDITIT-----------KSLDYEKAKF 314

  Fly   350 FTVFARDHGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDS 414
            ..:.......|....||.|.|.:||.||:.|    .|:.... .|:|.|:|..|||:|...|.|.
  Rat   315 HEIDIEAQDGPGLLTRTKVIVTVLDVNDNAP----EFYMTSA-TASVPEDAPLGTVIALFNVHDR 374

  Fly   415 DSGLNGRTSVRIVSGNELGHFRLEEAADLHIVRV-NGVLDREEIGKYNLTVVAMDQGTPARTTTA 478
            |||.|   :|...|..|:..|:||.:.|.:...| ...||||:...||:|:.|.|||:|:.:|.|
  Rat   375 DSGQN---AVVTCSLPEMLPFKLERSVDNYYRLVTTRALDREQFSFYNITLRAKDQGSPSLSTDA 436

  Fly   479 HLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHY----DILSGNEL 539
            ||::.|.|:||:.|.|.:..|||.:.|..|.|:.:.|:.|.|.|:..||.|.|    |...|..|
  Rat   437 HLLLQVADINDNPPSFSRGAYSAYIPENNPRGTSIFSVLAYDPDSNDNAHVTYSLAEDTFQGAPL 501

  Fly   540 -KWFSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF---- 599
             .:.|::..||::......|.|....::|.:.|.|.|..|..:...|.:.::|:||..|:.    
  Rat   502 SSYISINSDTGVLYALRSFDYEQFQDLQLWVIAVDSGKPPLSSNVSLSLFLVDQNDNMPEILYPA 566

  Fly   600 --SQREQNVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTT 661
              :.....|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|
  Rat   567 LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE---PGLFSVGLHTGEVRT 628

  Fly   662 RRP-LDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLAD------ 719
            .|. |||:.:.| .:.|..:|.|.| |.|||.|:.:.:|   ||.|:.        |||      
  Rat   629 ARALLDRDALKQ-SLVVAVQDHGQP-PLSATVTLTIAIA---DNIPEV--------LADLVSIRT 680

  Fly   720 ----DDDDIKLKKEVEKERI----LLHVTASDKDDGDNALIEYRL---------ESGGEGLFQLD 767
                ||.::.|...|....:    |..|.         ||:..||         ::.|:|...:.
  Rat   681 PANSDDSELTLYLVVAVAVVSCVFLAFVI---------ALLALRLRRWHMSRMPQASGDGFGGIP 736

  Fly   768 AR---------------SGAISLRGDAPAS--MHWKPHYKLLVSARDAGQRRSQQDAIVEIVLKS 815
            |.               |..:||..|:..|  :..:|:|               .|.::......
  Rat   737 ASHFVGVDGVRAFLQTYSHEVSLTADSGKSHIIFPQPNY---------------ADTLISQESCE 786

  Fly   816 KLEMLECGQAQAGGYEFQMVEDHEQQRNSQ--PNREVGIVQVK--STNGKANSHIEYDIIQGDRA 876
            |.:.|...|:        :::|..::...|  ||.:....|.:  .|:|..|         ||. 
  Rat   787 KNDFLSAPQS--------LLDDKREETPQQAPPNTDWRFSQAQRPGTSGSQN---------GDE- 833

  Fly   877 QNFRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPV 941
                        |...|.::.:....:..||||:|.::..:::               |......
  Rat   834 ------------TGTWPNNQFDTEMLQAMILASASEAADGSST---------------LGGGTGT 871

  Fly   942 FALDRESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            ..|.....|..:|.......|.:|:       .|.|:    :|||...::....|..|
  Rat   872 MGLSARYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 16/55 (29%)
Cadherin_repeat 163..266 CDD:206637 37/102 (36%)
Cadherin_repeat 275..378 CDD:206637 32/106 (30%)
Cadherin_repeat 393..490 CDD:206637 41/97 (42%)
Cadherin_repeat 498..594 CDD:206637 29/100 (29%)
Cadherin_repeat 603..704 CDD:206637 32/102 (31%)
Cadherin_repeat 735..814 CDD:206637 17/108 (16%)
Cadherin 843..>907 CDD:394985 11/67 (16%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga2NP_001032216.1 Cadherin_2 30..112 CDD:462413 9/36 (25%)
Cadherin_repeat 139..238 CDD:206637 37/105 (35%)
Cadherin_repeat 246..343 CDD:206637 32/107 (30%)
Cadherin_repeat 353..448 CDD:206637 41/97 (42%)
Cadherin_repeat 457..558 CDD:206637 30/100 (30%)
Cadherin_repeat 579..666 CDD:206637 30/94 (32%)
Cadherin_C_2 688..772 CDD:465139 16/92 (17%)
Cadherin_tail 810..>904 CDD:435046 23/141 (16%)
Blue background indicates that the domain is not in the aligned region.

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