DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and Cad88C

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_731930.3 Gene:Cad88C / 41774 FlyBaseID:FBgn0038247 Length:1981 Species:Drosophila melanogaster


Alignment Length:2250 Identity:559/2250 - (24%)
Similarity:880/2250 - (39%) Gaps:567/2250 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1796 IALGGQPR------TSRTKVRVTVLD------KNDSPPQFL---DTPFVYNVSE--DLQIGHTIS 1843
            :.|.||.|      .|...::|.:|.      .::.||:|.   .:..|..:.|  :.::|..|.
  Fly    22 VRLKGQRRRSFSSYISSISIQVIILTTLISLVASNRPPRFAIDGQSEIVLRLKESPETKVGTLIY 86

  Fly  1844 TLRAHDPDTLGSVTFLLMDGHDGKFLLEPSTG----KLILNDTLDRETKSKYELRIRVSDGVQYT 1904
            ||:.:|||. ..:||...:.||.:.:...:||    |:.|...||||.:.:|.:.:.::|.....
  Fly    87 TLKGYDPDN-DPLTFGKRNSHDSEIIRIENTGGNEAKIFLAKELDRELQDEYAIVLTLTDSHYSD 150

  Fly  1905 EAYAT----IQVSDTNDNPPLFEDTVYSFDIPENAQRGYQVGQIVARDADLGQNAQLSYGVVS-D 1964
            ..|.|    :.|.|.|||.|.|.....:.:|||.:..|. |..:.|.|||.|...|:.|.:.. |
  Fly   151 HNYVTQSFLLLVEDINDNVPTFLPYQNAIEIPEGSAPGV-VSTLEATDADEGAYGQVVYYLQELD 214

  Fly  1965 WANDVFSL--NPQTGMLTLTARLDYEEVQHYILIVQAQD--NGQPSLSTTITVYCNVLDLNDNAP 2025
            ..|||||:  :...|:|.|...||||....|.|.|.|.|  |..|..:.|..:...|.||.|..|
  Fly   215 GDNDVFSIATHQGKGILRLQKELDYERKSLYQLRVLAIDRANQGPINTGTAAILVKVKDLEDQPP 279

  Fly  2026 IFDPMSYSSEVFENVPIATEVVTVSAKDIDSGNNGLIEYSITAGDVDSEFGIDSN-GTIRTRRNL 2089
            .|..:...:.:.|:.|:.|:|:.|.|.|.|.|.|..|.||:.|.|:   |.|:.: |.:.|...|
  Fly   280 EFVEVQAVARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEANDL---FDINPHTGIVHTLTKL 341

  Fly  2090 DREHRS-----TYTLTVTARDCADEFASFSELEETQLKLKYRSPRKYQQTRQEFLAHQKQQRLSS 2149
            |||.:|     .:.|.::|.:                                 |:....|...:
  Fly   342 DREEQSDQVNGAHILRISATE---------------------------------LSKSNTQMAPT 373

  Fly  2150 TVK--VTILIKDVNDEVPVF------ISANETAIMENVAINTVVIAVKAV--DNDEGRNG----Y 2200
            ||:  ||:::.|||||:|.|      ...||.| ..|..:|.:...|:.|  |:|||.||    :
  Fly   374 TVRTEVTVIVSDVNDEIPTFGETVYRCEVNENA-QTNTPLNFIDEEVQNVVFDHDEGNNGTFRLF 437

  Fly  2201 IDYLMKEARDEDMGQSDPLPFSLNPTDGQLRVVD--ALDRELRSSYLLNITARDRGEPPQSTESQ 2263
            :|      ...|:.:..| ..::|..:..|||.:  :||.|..:.....|.||:..||.:.:.:.
  Fly   438 LD------PPNDLFEIVP-ELAVNEANFMLRVKNSKSLDFEQFTEVNFTIFAREVDEPSRWSSAH 495

  Fly  2264 LLIRILDENDNSPVFDPKQYSASVAENASIGAMVLQVSATDVDEGANGR--IRYSIVLGDQNHDF 2326
            :.|.|.|:|||.|.|....|:|||.||:....::..|.|.|||.|..|.  |||:.:.|...|..
  Fly   496 VQIFIRDQNDNFPEFSQTIYNASVLENSEQDTIITHVQAVDVDSGDYGTMGIRYTNLRGGIAHLL 560

  Fly  2327 SISEDTGVVRV--AKNLNYER--LSRYSLTVRAEDCALENPAGDTAELTINILDINDNRPTFLDS 2387
            :::..|||:.:  |....::|  :||:.|||.|.|.|.:... :||::.::|||:|||.|||...
  Fly   561 NLNPITGVITIKQAGGTAFDREIISRHYLTVEAIDNAGQGNR-NTAQIIVDILDVNDNAPTFPQR 624

  Fly  2388 PYLARVMENTV---PPNGGYVLTVNAYDAD-TPPLNSQVRYFLKEGDSDLFR----INASSGDIA 2444
            .|..:::||..   .|     |.:.|.||| ....||||.|.:.||   |:|    |:..||   
  Fly   625 QYETKLLENQAEFETP-----LQLEARDADLNGTENSQVTYEIVEG---LYRSNFTIDPQSG--- 678

  Fly  2445 LLKPL---DREQ--------QSEYT----------LTLVAMDTGSPPLTGTGIVRVEVQDINDND 2488
            ||:|:   |.|:        ...||          |.:.|.|:|.|.|:....|.:.|||:|||.
  Fly   679 LLRPVHSFDFEELVDGSSRRSDPYTGGSFSIREIDLLVRARDSGIPMLSTVVPVLIYVQDVNDNA 743

  Fly  2489 PVFELQSYHATVRENLPSGTHVLTPRATDKD-EGLNAKLRFNLLGEHMHRFHIDSETGEISTA-- 2550
            |:|:...|..||.|:||.|:.||...|.|:| ...|..:.:.:......:|.|:||||.||.|  
  Fly   744 PIFQQSFYAKTVPEDLPGGSSVLQVTAIDRDGSAPNNVVVYRIQTGAGDKFIINSETGVISVAHG 808

  Fly  2551 TTLDREET----SVYHLTLMAQDSSITEPR-ASSVNLTISVSDVNDNIPKFDSTTYNVAVPERIS 2610
            ..||.:.|    |:|.|:::|.|..:...: .::..:.||:.|||:..|...... .:.:.|...
  Fly   809 ANLDPDLTESKRSLYTLSVIALDGGLGNSQLMTTCTVNISIQDVNNKPPVLKEMP-ALQILENTP 872

  Fly  2611 KGEFVFGARALDLDDGENAVVHYTISGRDQHYFDINTKTGVVSTKLELKTKTKSHDDLTYTIVIS 2675
            .|..|:..:|.|||  ..|::.|.:   :..:.:..|:.|.:       .|:..:|.|       
  Fly   873 VGTLVYRIQATDLD--HKAILRYKL---NPEHCEGRTEEGAL-------VKSSEYDFL------- 918

  Fly  2676 AMDQGEQSLSSKAELTVILRPPELFPTFAYMANSHFAMSEDVRPGKMITKVSATSPKKGLVGKIR 2740
                                                                             
  Fly   919 ----------------------------------------------------------------- 918

  Fly  2741 YAIAGGIMGDSLRVDPNSGLLSVGQDGLDYELTHLYEIWIEAADGDTPSLRSVT--LITLNVTDA 2803
                     .:..||...|.|.|.: .||.|.....::.|...|......|.:.  .:::.|.|.
  Fly   919 ---------GAFEVDSIEGTLKVVK-LLDRERVEHIKLAITVEDLAAAKGRQIAEGFLSIQVLDE 973

  Fly  2804 NDNAPVMEQLIYNAEVLEEESPPQLIAVVKASDRDSGD------NGNVIYRLQNDFDGTFEITES 2862
            |||.|......|...:.|......:|..|.|||.|...      .||..||.....|     .::
  Fly   974 NDNNPKFRLPFYRQSITENSINGAMIVNVLASDVDKNRTITYALEGNPTYRSLMHLD-----PQT 1033

  Fly  2863 GEIYTRMRLDREEIGDYAFVVEAVDQGVPHMTGTASVLLHLLDKNDNPPKFT-RLFSLNVTENAE 2926
            |||....::|.|:.....|.|.|.|.|:|..:....|.:.:||:|||.|.|. ...:..::|||.
  Fly  1034 GEIVVASKIDHEQHQWLNFSVRATDSGIPARSSLVDVYITVLDENDNNPYFVGGSKNYTISENAA 1098

  Fly  2927 IGSFVIRVTSSDLDLGANANASYSFSENPGE-KFRIEPQSGNITVAGHLDREQQDEYILKVVASD 2990
            .|:.|..:.:.|.|.|.....::.......: ||.|:..:|.:|||..||||.:|.|.|.:.|.|
  Fly  1099 PGTRVATLQAGDADSGDFGKITFLMDRISSQGKFTIDADTGVLTVADRLDRESKDSYNLVIEAWD 1163

  Fly  2991 G---------AWRAETPITITIQDQNDNAPEFEHSFYSFSFPELQQSIALVGQIIATDR-DKQGP 3045
            .         :..|...:.|:|.|:|||.||.:.........|..:....|..|:..|. |...|
  Fly  1164 NYQFGFLAGESRNAFKQVFISILDENDNPPEVDLPMSCVLITEYHELHERVASIVGKDADDPTTP 1228

  Fly  3046 NSVISYSLQQPSP--MF---SIDPATGEVFSKKAVRFKHSQYVRSPENMYALTVLATDNGKPPLY 3105
            |..:.:::.:.:.  ||   .||....::|:.|::|.::..        |:||:...|.|.|...
  Fly  1229 NGRLDFAITRGNKDGMFELRQIDAWNAQIFASKSLRNRYGN--------YSLTITTRDMGLPANI 1285

  Fly  3106 SECLVNINIVDAHNNPPKFEQAEYLAPL-------PQDAVRGQRIVRVHANDKQDLGTNEM-DYS 3162
            ....::|.:.|.:::.|.|     :.||       |::|..|..|::.:|:| .|:|.|.: .|.
  Fly  1286 VHNTLDICVSDFNDHAPVF-----VRPLHNTTVRIPENATVGTLILQAYASD-GDMGQNALVRYR 1344

  Fly  3163 LMTFNLSS--IFSVGRHDGWITLVKPIQVPPNTRYELVVRATDRGVPPQ-SDETRVVIVVTGENM 3224
            |....|.|  :|.|....|.:.|.:.:.......:|:.:.|.|:|:|.. |.:..:.|.|...|.
  Fly  1345 LKPDPLGSYKMFEVDGSTGELFLKEQLNREKQKIHEIRIEAYDQGLPTSLSSDLDLTIYVRNVND 1409

  Fly  3225 DTPRFSVNSYQVIVPENEPVGSTILTVGAT--------DDDTGPNGMLRYSISGGNERQDFSVDE 3281
            ..|:|.||...|...|:...||..:.:..|        ||.......:.|.|..|||...|.:|.
  Fly  1410 YEPQFMVNEISVNFTEHSDPGSERIKLPDTIDKDQLELDDPNDTPSQVCYFIVNGNEAGYFRLDP 1474

  Fly  3282 RTGGIVIQQQLDYDLIQEYHLNITV--------------------------------QDLGYHPL 3314
            .|..:.:.::||.::|..:.|.:..                                |..||...
  Fly  1475 ETHILTVDRELDREVIANFTLYVRATENCRNDSISGGEKRRRMGIEINNRLGGIVHNQQFGYDRF 1539

  Fly  3315 SSVAMLTIILTDVNDNPPVFNHKEYHCYIPENKPVGTFVFQAHAADKDSPKNAIIHYAFLPSGPD 3379
            .....|.  .|:.|:            |.||:..:  ..::|:.:.::.|...:.          
  Fly  1540 KHSRQLR--STESNE------------YGPEDAEL--LSYEAYDSSQEDPTGGLA---------- 1578

  Fly  3380 RHFFIMNQSNGTISSAVSFDYEERRIYTLQIKAKNPDSSMESYANLYVHVLGVNEFYPQFLQPVF 3444
                   .::..:.|.|             ||.|             |.||.:|:..|:|...:|
  Fly  1579 -------TTHPELDSTV-------------IKVK-------------VRVLDINDNPPRFRSKIF 1610

  Fly  3445 HFDVSETSAVGTRVGAVQATDKDSGEDGRVYYLLVGSSNDKGFRIDTNTGLIYVARH---LDRET 3506
            ...::..:..|.:...|:|||.|.|::||:.|..||.     .|...:.||..|.:.   ||:||
  Fly  1611 TGGITTNADFGLKFMRVEATDADEGDNGRIGYYQVGE-----IRQTLSEGLENVRKAPFLLDQET 1670

  Fly  3507 QNRVVLTVMAKNYGSIRGNDTDEAQVIISIQDGNDPPEFIKHYY--------TSTISEAAPV--- 3560
                         |.::.|              .||.:.:|.|:        ||.:.:.|.|   
  Fly  1671 -------------GEVQLN--------------FDPQKGMKGYFDFVVLANDTSGMKDVAHVFIY 1708

  Fly  3561 ----GTKVTTVKAIDKD-VRTQNNQFSYSIINGNLKQSF----KIDVQTGEISTASR-------- 3608
                ..||..|..:..| :|::.:.|..::  .|:.:|.    :|.|...:..:..:        
  Fly  1709 LLREDQKVRFVFRLQPDELRSRVDSFRDTL--SNITESIVNIDEIKVHENKDGSVDKTKTDLYMH 1771

  Fly  3609 -LDREETSTYNL--VIGAIDTGLPPQTGSATVHIE-----LEDVN----------------DNGP 3649
             ::||:.|.|.:  |:..||:           |||     .:::|                ..||
  Fly  1772 LVEREDNSIYEVSEVLKLIDS-----------HIESLNGLFKELNVLDTQAAEAQLLTAGPSRGP 1825

  Fly  3650 TFT--------------------PEGLNGYISENEPA------GTSIMTLIASDPDLPRNGGPFT 3688
            .|.                    ....|||..:...|      |.|.|:|  .|...|....|.|
  Fly  1826 LFVWLIFTNLFLATLLVVTIALCASQRNGYRRQLRAAKVNIFRGHSSMSL--QDAQEPATRVPNT 1888

  Fly  3689 YQ-LIGGKHKSWLSVDRNSGVVRSTTSFDREMTPILEAIIEVEDSGKPKQKSQHLLTITVLDQND 3752
            .: .:.|.:..||.            .:|.|.       .:.|:||.......       ||.|.
  Fly  1889 NKHSVQGSNPIWLK------------GYDNEW-------FKSEESGSIGGHDS-------LDDNF 1927

  Fly  3753 NPSTTRSLHIAV----SLFN--GDLPSNVKLADVRPNDID 3786
            ....|:.:|..:    .|||  .||..:..|.    |.||
  Fly  1928 LAVATQDMHETLKGTAKLFNNSNDLNRHFNLY----NQID 1963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637 7/33 (21%)
Cadherin_repeat 1827..1918 CDD:206637 28/100 (28%)
Cadherin_repeat 1926..2023 CDD:206637 36/101 (36%)
Cadherin_repeat 2031..2162 CDD:206637 34/138 (25%)
Cadherin_repeat 2172..2274 CDD:206637 31/109 (28%)
Cadherin_repeat 2282..2380 CDD:206637 37/103 (36%)
Cadherin_repeat 2388..2487 CDD:206637 39/127 (31%)
Cadherin_repeat 2495..2592 CDD:206637 35/104 (34%)
Cadherin_repeat 2600..2694 CDD:206637 14/93 (15%)
Cadherin_repeat 2710..2806 CDD:206637 14/97 (14%)
Cadherin_repeat 2814..2909 CDD:206637 28/100 (28%)
Cadherin_repeat 2917..3009 CDD:206637 29/101 (29%)
Cadherin 3018..3114 CDD:394985 21/101 (21%)
Cadherin 3129..3220 CDD:394985 26/101 (26%)
Cadherin_repeat 3233..3330 CDD:206637 25/136 (18%)
Cadherin_repeat 3338..3434 CDD:206637 13/95 (14%)
Cadherin_repeat 3443..3541 CDD:206637 23/100 (23%)
Cadherin_repeat 3550..3647 CDD:206637 25/148 (17%)
Cadherin_repeat 3657..3753 CDD:206637 23/102 (23%)
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Cad88CNP_731930.3 Cadherin_repeat 76..168 CDD:206637 26/92 (28%)
Cadherin_repeat 179..276 CDD:206637 36/97 (37%)
Cadherin_repeat 287..388 CDD:206637 34/136 (25%)
Cadherin_repeat 397..506 CDD:206637 32/116 (28%)
Cadherin_repeat 514..617 CDD:206637 37/103 (36%)
Cadherin_repeat 625..742 CDD:206637 39/127 (31%)
Cadherin_repeat 751..853 CDD:206637 33/101 (33%)
Cadherin_repeat 865..976 CDD:206637 28/204 (14%)
Cadherin_repeat 985..1080 CDD:206637 28/99 (28%)
Cadherin_repeat 1090..1191 CDD:206637 29/100 (29%)
CA 1221..1302 CDD:214520 19/88 (22%)
Cadherin_repeat 1312..1409 CDD:206637 25/97 (26%)
Cadherin_repeat 1418..>1502 CDD:206637 19/83 (23%)
Cadherin_repeat 1617..1710 CDD:206637 30/124 (24%)
Blue background indicates that the domain is not in the aligned region.

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