DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhgb7

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001012215.1 Gene:Pcdhgb7 / 364844 RGDID:1588516 Length:931 Species:Rattus norvegicus


Alignment Length:998 Identity:262/998 - (26%)
Similarity:432/998 - (43%) Gaps:183/998 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GQP----------RGTTVGFIPTKPKFS--------YRFNEPPREFTLDPVTGEVKTNVVLDREG 122
            |||          ||:.||.:......|        .|.:.....|::|..:|::.....:|||.
  Rat    30 GQPVRYSIPEELDRGSVVGNLAKDLGLSVLEVSARKLRVSAEKMHFSVDSESGDLLVKDRIDREQ 94

  Fly   123 M-----RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDAATD 182
            :     |....|..:...|.....|.:::.||||::|:||:..|.:..|||.:.|.|.:|::|.|
  Rat    95 ICKGRRRCELQLEAVLENPLNIFHVVVEIEDVNDHAPQFPKDEINLEISESVSPGVRTILESAKD 159

  Fly   183 ADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGS 247
            .|:|.|.:: :|::   :.::.|.|:...||.| |.|..||....||||:..::.|.::|.|||.
  Rat   160 PDIGMNSLS-KYQL---SPNDYFLLLVKDNPDG-TKYPELELQKMLDRETESTHNLVLTAVDGGD 219

  Fly   248 PPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITY-YLA- 310
            |||.|..|:.:.::|.|||||:|....|.|.:.|...|||.|:.:.|:|.|.|.|::.|| :|. 
  Rat   220 PPRSGTAQLRIRVMDANDNPPVFSQEVYRVRVREDLPPGTTVLRLRATDQDEGINAEFTYSFLGV 284

  Fly   311 --ETEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTYVTVNLL 373
              :.:|:|:::|.||.|.|.:.::..:         .:.....|.|:|.||  ...:..|.:.:|
  Rat   285 ANKAQHEFSLDPVTGDIITLQSLDFEE---------VEQYTIDVEAKDRGS--LSSQCKVIIEVL 338

  Fly   374 DTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNELGHFRLE 438
            |.||:.|.|......|     .:.|::.:|||||...|:|.|||.|...:..: |||  ..|::.
  Rat   339 DENDNRPEIIITSLSD-----QILEDSPSGTVVALFKVRDRDSGENAEVTCSL-SGN--NPFKIH 395

  Fly   439 EAADLHIVRV-NGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAV 502
            .:::.:...| :.:||||:...||:|:.|.|:|.|..:::..:.::|.||||:.|||::..|...
  Rat   396 SSSNNYYKLVTDSILDREQTPGYNVTITATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLIN 460

  Fly   503 LSELAPTGSFVASITATDEDTGVNAQVHYDILSGN-ELK----WFSMDPLTGLIVTTGPLDREIR 562
            :.|....|:.:..:.|.|.|.|.|..|.|.|::.: |.|    :.|::..:|::......|.|..
  Rat   461 VPENNQPGTSITQVRAWDPDVGSNGLVSYSIIASDLEPKVLSSFVSVNQDSGVVFAQRAFDHEQL 525

  Fly   563 DTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQ--FSQREQNVTLGED-----APPQTIVAL 620
            .:.:|::.|||.|.....|...::|::.|.||.||:  :...|.:.:...|     |.|..:|..
  Rat   526 RSFQLTLQARDQGSPALSANVSMRVLVGDRNDNAPRVLYPALEPDGSALFDMVPRAAEPGYLVTK 590

  Fly   621 MTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPLDREKMSQYEISVIARDQGAP 685
            :.|.|.|.|.|..:::.:..:.:   |..|:|...||::.|.|.|..:..::..:.|..||.|.|
  Rat   591 VVAVDADSGHNAWLSYHVLQASD---PGLFSLGLRTGEVRTARALGDKDAARQRLLVAVRDGGQP 652

  Fly   686 TPQSATATVWLNVADVNDN------------DPQFYPRHY-IYSLADDDDDIKLKKEVEKERILL 737
             |.|||||:.|..||....            |||...:.| :.:||           :.....||
  Rat   653 -PLSATATLLLVFADTLQEALPDLVDHPIPPDPQSELQFYLVVALA-----------LISVLFLL 705

  Fly   738 HVTASDKDDGDNALIEYRLESGGE----GLF--QLDARSGAI----SLRGDAPASMH-------W 785
            .:..:         |..||.....    |.|  .|.::|..:    |..|..|.:.:       .
  Rat   706 AIILA---------IALRLRQSSSPSTTGCFGSVLGSKSRPVLPPNSSEGTLPYAYNVCVPGDQL 761

  Fly   786 KPHYKLLVSARDAGQRRSQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVEDHEQQRNSQ--PNR 848
            ||.:..|.|..|       ..|..:::.|.....|.......|      ||..||..|.|  ||.
  Rat   762 KPEFNFLTSVGD-------YPAAQDLLNKDSSSALLASILTPG------VEADEQTFNQQAPPNT 813

  Fly   849 EVGIVQVK--STNGKANSHIEYDIIQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTILASSS 911
            :....|.:  .|:|..|         ||.             |...|.::.:....:..||||:|
  Rat   814 DWRFSQAQRPGTSGSQN---------GDE-------------TGTWPNNQFDTEMLQAMILASAS 856

  Fly   912 SSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAAVGQEIYLSRVRDRDAGV 976
            .::..:::               |........|.....|..:|.......|.:|:       .|.
  Rat   857 EAADGSST---------------LGGGTGTMGLSARYGPQFTLQHVPDYRQNVYI-------PGS 899

  Fly   977 NSRISYSLTNNPNQQFRIGPVTG 999
            |:    :|||...::....|..|
  Rat   900 NA----TLTNAAGKRDGKAPAGG 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 22/98 (22%)
Cadherin_repeat 163..266 CDD:206637 37/102 (36%)
Cadherin_repeat 275..378 CDD:206637 31/106 (29%)
Cadherin_repeat 393..490 CDD:206637 32/97 (33%)
Cadherin_repeat 498..594 CDD:206637 25/100 (25%)
Cadherin_repeat 603..704 CDD:206637 32/105 (30%)
Cadherin_repeat 735..814 CDD:206637 18/95 (19%)
Cadherin 843..>907 CDD:394985 12/67 (18%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhgb7NP_001012215.1 Cadherin_2 32..112 CDD:462413 15/79 (19%)
Cadherin_repeat 137..238 CDD:206637 38/105 (36%)
Cadherin_repeat 246..343 CDD:206637 31/107 (29%)
Cadherin_repeat 355..448 CDD:206637 32/95 (34%)
Cadherin_repeat 457..558 CDD:206637 26/100 (26%)
Cadherin_repeat 578..662 CDD:206637 27/87 (31%)
Cadherin_C_2 687..768 CDD:465139 17/100 (17%)
Cadherin_tail 810..>904 CDD:435046 23/141 (16%)
Blue background indicates that the domain is not in the aligned region.

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