DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and stan

DIOPT Version :9

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster


Alignment Length:2268 Identity:568/2268 - (25%)
Similarity:907/2268 - (39%) Gaps:501/2268 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  2493 LQSYHATVRENLPSGTHVLTPR----ATDKDEGLNAKLRFNLLGEHMHRFHIDSETGEISTATTL 2553
            ::||...|.|:.|.||.:....    .:::...:||....|.:  | |...::.:.|:|.....|
  Fly    27 IKSYLIIVHEDTPPGTVIFNASVYKLGSERHYKINAHKSANFV--H-HLVSVNHKDGQIQLRKAL 88

  Fly  2554 DREETSVYHLTLMAQDSSITEPRASS-------VNLTISVSDVND-----------NIPKFDSTT 2600
            ..:  .:|:..|.......|..|..|       |.:.:|....|:           :..:.|:|.
  Fly    89 KCD--GIYYPNLFTFYVDSTSNRLRSIDYYSLPVRIFVSGHSCNEDRRIEQELHHHHYEEEDNTG 151

  Fly  2601 YNVAVPERISK-----------------------GEFVFGARALDLDDGENAVVHYTISGRDQHY 2642
            |:.....|.::                       |:.:||      |..:|.:.|..:|      
  Fly   152 YSKRRRRRSTQEMIQLNGNQLEEVFRQNSTEFRAGDLIFG------DSFDNEMRHRILS------ 204

  Fly  2643 FDINTKTGVVSTKLELKTKTKSHDDL---------TY-TIVISAMDQGEQSLSSKAELTVILRPP 2697
                .|...|.:...|..:...|..:         || :..|...|:..|....:::....|.  
  Fly   205 ----RKRRAVGSPDPLHLQPALHRRISDAKQWISETYASYAIHTTDKWNQICLRRSQFINSLN-- 263

  Fly  2698 ELFP---------TFAYMANSHFAM---------SEDVRPGKMITKVSATSPKKGLVGKIRYAIA 2744
            ...|         :|..:.:..||:         |.||...:.:.|||.|.              
  Fly   264 AFLPRSVCQHCKVSFLDVNDERFAIEHQSRDLVASRDVCIAESMWKVSITF-------------- 314

  Fly  2745 GGIMGDSLRVDPNSGLLSVGQDGLDYELTHLYEIWIEAADGDTPSLRSVTLITLNVTDANDNAPV 2809
                  ::|.|....:.|      |:.|..:|.   .....||...|.|.      .:..:.:|.
  Fly   315 ------NIRCDRRDIVDS------DHRLKIVYH---HQEFNDTDIARRVR------RELRNQSPY 358

  Fly  2810 MEQLIYNAEVLEEESPPQLIAVVKASDRDSGDNGNVIYRLQNDFD----GTFEI-TESGEIYTRM 2869
            .||.:|.|.||||:.....:..|:|.|   .::..|:|.:.:..|    ..|:: :.:|.:.|..
  Fly   359 FEQALYVASVLEEQPAGAAVTTVRARD---PEDSPVVYSMVSLLDSRSQSLFKVDSRTGVVTTSA 420

  Fly  2870 RLDREEIGDYAFVVEAVDQGVPHMTGTASVLLHLLDKNDNPPKF-TRLFSLNVTENAEIGSFVIR 2933
            .||||.:..:.|.|.|.|...|..:||.::.:::||.||:.|.| ...|..::.|.|.:||.||.
  Fly   421 SLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASIREGATVGSTVIT 485

  Fly  2934 VTSSDLDLGANANASYSF------------SENPGEKFRIEPQSGNITVAGHLDREQQDEYILKV 2986
            :.::|.|:|.||...|..            .|.|  .|||:.:||.|:....||||..|.|.|.|
  Fly   486 LRATDQDIGKNAEIEYGIEAVTDGAGLAQDQEMP--IFRIDSRSGVISTRSSLDRETSDSYHLLV 548

  Fly  2987 VASDGA------WRAETPITITIQDQNDNAPEFEHSFYSFSFPELQ---QSIALVGQIIATDRDK 3042
            .|:|.|      ..|...:.:.:.|.|||.|:|....|:...||.|   .....|..|.|||.| 
  Fly   549 TAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYTVQVPEDQWGGTEDNTVAHIRATDAD- 612

  Fly  3043 QGPNSVISYSLQQPSPMFSIDPATGEVFSKKAVRFKHSQYVRSPENMYALTVLATDNGKPPLYSE 3107
            ||.|:.|.|::                                                      
  Fly   613 QGNNAAIRYAI------------------------------------------------------ 623

  Fly  3108 CLVNINIVDAHNNPPKFEQAEYLAPLPQDAVRGQRIVRVHANDKQDLGTNEMDYSLMTFNLSSIF 3172
                                          :.|                          |..|.|
  Fly   624 ------------------------------IGG--------------------------NTQSQF 632

  Fly  3173 SVGRHDGWITLVKPIQVPPNTRYELVVRATDRGVPPQSDETRVVIVVTGENMDTPRFSVNSYQVI 3237
            |:....|.::||||:.......|.||:||.|.|.|.:|:.|::::.|...|.:.|||..:.:|..
  Fly   633 SIDSMSGDVSLVKPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQES 697

  Fly  3238 VPENEPVGSTILTVGATDDDTGPNGMLRYSISGGNERQDFSVDERTGGIVIQQQLDYDLIQEYHL 3302
            |.||.|||..|:.|.|.|.|.|.|..:.||||..::....:||.|||.:...:.||.:....:..
  Fly   698 VLENVPVGYNIIRVQAYDSDEGANAEITYSISERDDNFPLAVDPRTGWVQTIKPLDREEQGRFAF 762

  Fly  3303 NITVQDLGYHPLSSVAMLTIILTDVNDNPPVFNHKEYHCYIPENKPVGTFVFQAHAADKDSPKNA 3367
            .:..:|.|..|.|:.:.:.|.:.|||||.|.||.|.|...:.|::|.||.|....|.|.|  :::
  Fly   763 QVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEANVGEDQPPGTPVTTVTATDPD--EDS 825

  Fly  3368 IIHYAFLPSGPDRHFFIMNQS-NGTISSAVSFDYEERRIYTLQIKAKNPDSSMESYANLYVHVLG 3431
            .:||..........|.|.:|: .|.|:.|.|.||::.:.:.|.:.|.:.....:: |.:::::..
  Fly   826 RLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGRSDT-ATVHINITD 889

  Fly  3432 VNEFYPQFLQPVFHFDVSETSAVGTRVGAVQATDKDSGEDGRVYYLL-------VGSSNDKGFRI 3489
            .|.|.|.|....:...|.|.:.|||.|..|.|||.|.|.:.::.|.|       :||.:.  |.|
  Fly   890 ANNFAPIFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDP--FSI 952

  Fly  3490 DTNTGLIYVARHLDRETQNRVVLTVMAKNYGSIRGNDTDEAQVIISIQDGND-PPEFIKHYYTST 3553
            :..||.|.....|||||.:..:|||.||:.|:...:||.:.:  |.:.|.|| .|.|....|.::
  Fly   953 NPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVE--IGVTDVNDNAPAFKSPLYQAS 1015

  Fly  3554 ISEAAPVGTKVTTVKAIDKDVRTQNNQFSYSIINGNLKQ-SFKIDVQTGEISTASRLDREETSTY 3617
            |.|.|.|||.|..|.|.|.||.. |.:..|.:.:.:::. ||.||..:|.|.|...||||..:.:
  Fly  1016 ILEDALVGTSVIQVAASDPDVGL-NGRIKYLLSDRDIEDGSFVIDPTSGTIRTNKGLDRESVAVF 1079

  Fly  3618 NLVIGAIDTGLPPQTGSATVHIELEDVNDNGPTFTPEGLNGYISENEPAGTSIMTLIASDPDLPR 3682
            :|...|:|.|.||.:.:..|.|.||||||:.|||..:.:..|:.||.|.|:.:..:.|.|||...
  Fly  1080 HLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDKITLYVPENSPVGSVVGEIHAHDPDEGV 1144

  Fly  3683 NGGPFTYQLIGGKHKSWLSVDRNSGVVR----STTSFDREMTPILEAIIEVEDSGKPKQKSQHLL 3743
            | ....|.:|||...:..|:....|..|    :.|..|.|.|.....:: |..:..|.:...| :
  Fly  1145 N-AVVHYSIIGGDDSNAFSLVTRPGSERAQLLTMTELDYESTRKRFELV-VRAASPPLRNDAH-I 1206

  Fly  3744 TITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRLQKNPAQSQLQLAI 3808
            .|.|.|.|||....|...:..:.|....||. ::..:...|.|:......|:......:.|:|..
  Fly  1207 EILVTDVNDNAPVLRDFQVIFNNFRDHFPSG-EIGRIPAFDADVSDKLHYRILSGNNANLLRLNS 1270

  Fly  3809 PRACDLITTSHTT--PIASVFSYTGNDGKHGDVSSKVSVAFQSFNNETLANSVSIMVRNMTAYHF 3871
            .....:::....|  |..:....:.:||.: :..:.:.::.:....:.|.|||::.:..||...|
  Fly  1271 SSGGLVLSPQLNTNVPKFATMEVSVSDGIN-EAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAF 1334

  Fly  3872 LANHYRPILEMIKSRMS-----NEDEVILYSLLEGGSGNSTNLQLLMAVRLAKTSYQQ---PKYL 3928
            |:    |:|......::     .::.:.::|:.:....:|..|.:..:.|....|:::   |:||
  Fly  1335 LS----PLLNFFLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVSFSARRPDVSHEEFYTPQYL 1395

  Fly  3929 IERLREKRSAFSELLQKEVIVGYEPCSEPDVCENGGVCSATMRLLDAHSFVIQDSPALVLSGP-R 3992
            .||:...|:..:.|...||:...:.....:.|.|...|...::..:|..|:..|:   ||..| .
  Fly  1396 QERVYLNRAILARLATVEVLPFDDNLCVREPCLNFEECLTVLKFGNASEFIHSDT---VLFRPIY 1457

  Fly  3993 VVHDYSCQCTSGFSGEQCSRRQDPCLPNPCHSQVQCRRLGSDFQCMCPANRDGKH--CEKERSDV 4055
            .|:.::|.|..||:|.:                                    :|  |:.| .|:
  Fly  1458 PVNTFACSCPEGFTGSK------------------------------------EHYLCDTE-VDL 1485

  Fly  4056 CYSKPCRNGGSCQRSPDGSSYFCLCRPGFRGNQCESVSDSCRPNP---CLHGGL-CVSLKPGYKC 4116
            |||.||:|||:|.|...|  |.|:|.....|..||:.....||.|   | .||| |:|..|    
  Fly  1486 CYSDPCQNGGTCVRREGG--YTCVCPSTHTGQNCETGVGHLRPCPSETC-EGGLSCLSNYP---- 1543

  Fly  4117 NCTPGRYGRHCERFSYGFQPLSYMTFPALDVTTN-DISIVFATTKPNSLLLYNYGMQSGGR---- 4176
            :..|..|...||..:..|...|::||.:|..... ::.:.|||.:.|.|||||      ||    
  Fly  1544 SSQPPPYTATCELRARAFGRNSFLTFESLKQRHRFNLKLRFATVQENGLLLYN------GRYNEL 1602

  Fly  4177 SDFLAIELVHGRAYFS-SGGARTAISTVIAGRNLADGGWHKVTATRNGRVMSLSVAKC----ADS 4236
            .||:|:|:..|...|| |.|..:...:||....::||.||:|......|.::|.:..|    |.|
  Fly  1603 HDFIALEIHEGHVSFSFSLGDHSERISVIQEAKVSDGKWHQVEVVYLNRSVTLVLDNCDTAIALS 1667

  Fly  4237 GDVCTECLPGDSSCYADEVGPVGTLNFNKQ----------------PLMIGGLSSADPILERPGQ 4285
            |.:      ||....|:..    ||..:|:                ||.:|||    |.:.....
  Fly  1668 GQL------GDRWSCANRT----TLKLDKRCSLLTETCHRFLDLTGPLQVGGL----PRIPAHFP 1718

  Fly  4286 VHSDDLVGCLHSVHIGGRALNLSLPLQQKGILAGCNRQACQPALAAERCGGFAGQCIDRWSSSLC 4350
            |.:.|.|||:..:.|..|.::|:..:...|.||||.::|  |...:|.|.. .|.|.:.|.:..|
  Fly  1719 VTNRDFVGCISDLRIDDRFVDLNSYVADNGTLAGCPQKA--PLCQSEPCFN-GGTCREGWGTYSC 1780

  Fly  4351 QCGGHLQSPDCSDSLEPIT---LGEGAFVEFRISEIYRRMQLLDNLYNSKSAWLDNQQMRERRAV 4412
            :|........|.|:: |..   .|:|:   ...:.:.|.:||         .|..:..:|.|:..
  Fly  1781 ECPEGYAGNSCQDNI-PAPWRFSGDGS---LSFNPLLRPIQL---------PWTTSFSLRTRQKE 1832

  Fly  4413 SNFSTASQIYEAPKMLSMLFRTYKDQGQILYAATNQMFTSLSLREGRLVY-YSKQHLTINMTVQE 4476
            : |....||                 ||...||       :.||:|.|.| :..:.:.:     .
  Fly  1833 A-FLLQIQI-----------------GQNSSAA-------VCLRQGVLYYIFDGEPMYL-----A 1867

  Fly  4477 TSTLNDGKWHNVSL-FSESRSLRLIVD-GRQVGD---ELDIAGVHDFLDPYLTILNVGG------ 4530
            .:.|:||:||.|.: :.:...:...|| |::.|.   ...:.|:      |:..:.:|.      
  Fly  1868 GAFLSDGEWHRVEIRWQQGSEIHFSVDYGQRSGSVPMSQKVQGL------YVGKIVMGSPDGSIG 1926

  Fly  4531 ---EA--FVGCLANVTVNNELQPLNGSG-SIFPEVRYHGKIESGCRGDIGQDAAQVAD 4582
               ||  |.||:.:|.:        |:| |:.........:|.||     :..||..|
  Fly  1927 AVPEASPFEGCIQDVRI--------GAGQSVLSRPTIRENVEDGC-----ESRAQCPD 1971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:278457
Cadherin 950..1026 CDD:278457
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637 23/118 (19%)
Cadherin_repeat 2600..2694 CDD:206637 18/126 (14%)
Cadherin_repeat 2710..2806 CDD:206637 19/104 (18%)
Cadherin_repeat 2814..2909 CDD:206637 29/99 (29%)
Cadherin_repeat 2917..3009 CDD:206637 35/109 (32%)
Cadherin 3018..3114 CDD:278457 15/98 (15%)
Cadherin 3129..3220 CDD:278457 20/90 (22%)
Cadherin_repeat 3233..3330 CDD:206637 33/96 (34%)
Cadherin_repeat 3338..3434 CDD:206637 23/96 (24%)
Cadherin_repeat 3443..3541 CDD:206637 36/104 (35%)
Cadherin_repeat 3550..3647 CDD:206637 39/97 (40%)
Cadherin_repeat 3657..3753 CDD:206637 28/99 (28%)
EGF 4017..4047 CDD:278437 0/29 (0%)
EGF_CA 4056..4090 CDD:238011 15/33 (45%)
EGF_CA 4094..4128 CDD:238011 12/37 (32%)
Laminin_G_1 4156..4306 CDD:278483 52/174 (30%)
LamG 4428..4543 CDD:238058 28/131 (21%)
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 29/98 (30%)
Cadherin_repeat 468..577 CDD:206637 35/110 (32%)
Cadherin_repeat 585..685 CDD:206637 37/210 (18%)
Cadherin_repeat 693..790 CDD:206637 33/96 (34%)
Cadherin_repeat 799..891 CDD:206637 23/94 (24%)
Cadherin_repeat 901..1003 CDD:206637 37/105 (35%)
Cadherin_repeat 1012..1108 CDD:206637 38/96 (40%)
Cadherin_repeat 1118..1216 CDD:206637 28/100 (28%)
Cadherin_repeat 1235..1313 CDD:206637 11/79 (14%)
EGF_CA 1483..1518 CDD:238011 16/36 (44%)
LamG 1558..1734 CDD:238058 55/195 (28%)
EGF 1760..1789 CDD:278437 7/29 (24%)
Laminin_G_2 1826..1944 CDD:280389 33/161 (20%)
TNFRSF <1963..2061 CDD:304602 4/14 (29%)
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462299
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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