DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ft and Pcdh19

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:XP_006257284.1 Gene:Pcdh19 / 317183 RGDID:1565392 Length:1145 Species:Rattus norvegicus


Alignment Length:1234 Identity:301/1234 - (24%)
Similarity:470/1234 - (38%) Gaps:350/1234 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MERLLLLFFLLLAGRESLCQTGDTKLELLAPRGRSYATTYEQYAAFPRRRSSSSSPSGEMQSRAV 65
            ||.|||...|||                        |..:.|.||.                   
  Rat     1 MESLLLPVLLLL------------------------AVLWTQAAAL------------------- 22

  Fly    66 DTSADFEVLEGQPRGTTV----------GF-IPTKPKFSYRF--NEPPREFTLDPVTGEVKTNVV 117
             .:..:.|.|.|..||.:          || :.|:...::|.  |..|....::|.:|.:.|...
  Rat    23 -INLKYSVEEEQRAGTVIANVAKDAREAGFAMDTRQASAFRVVSNSAPHLVDINPSSGLLVTKQK 86

  Fly   118 LD-----REGMRDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLL 177
            :|     |:..:....|.|:||.....: :::::.|:|||:|.||...|.:..||:|:.|||:.|
  Rat    87 IDRDLLCRQSPKCIISLEVMSSSMEICV-IKVEIKDLNDNAPSFPAAQIELEISEAASPGTRIPL 150

  Fly   178 DAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISA 242
            |:|.|.|.|..|| ..||:....:   |.|.......| :.:..|....:||||::..|...|:|
  Rat   151 DSAYDPDSGSFGV-QTYELTPNEL---FGLEIKTRGDG-SRFAELVVEKSLDRETQSHYSFRITA 210

  Fly   243 RDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITY 307
            .|||.||..|.:.:.:.:.|.|||.|:|..|.|:||:.|.:.|.|||:.:.|||.|.|.|.::.|
  Rat   211 LDGGDPPHMGTVGLTIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTNGQVVY 275

  Fly   308 ----YLAE-TEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTY 367
                |:.: |...|.::|.:|:::.|..::. ::.:|..        ..|.|:|.|.........
  Rat   276 SFYGYVNDRTRELFQIDPHSGLVTVTGALDY-EEGHVYE--------LDVQAKDLGPNSIPAHCK 331

  Fly   368 VTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNEL 432
            |||::|||||:.|||:  ......::..|.|:|..|.|:|.|.|.|.|||||||...|:: ||. 
  Rat   332 VTVSVLDTNDNPPIIN--LLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLL-GNV- 392

  Fly   433 GHFRLEEAADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKS 497
             .|||:|......:.|:|.||||:..:||||:.|.|.|.|...:.....:.:.|.||:.|.|.|.
  Rat   393 -PFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQSAKSFTVRITDENDNHPHFSKP 456

  Fly   498 EYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILSGN-----ELKWFSMDPLTGLIVTTGPL 557
            .|..::.|....|:::.|::|.|.|.|:|..|.|.|:...     ...:.|::|.:|.|......
  Rat   457 YYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSF 521

  Fly   558 DREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNVTLGEDAPPQT------ 616
            :.|.....|..:.|:|||.....:...::|||||.||..|..:           |||..      
  Rat   522 NHEQTKAFEFKVLAKDGGMPSLQSNATVRVIILDVNDNTPVIT-----------APPLINGTAEV 575

  Fly   617 ----------IVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPLDREKMS 671
                      :|.::.|.|:|:|.||.||:.:... :|.:   |.:|.:.|::.|.|..:....:
  Rat   576 YIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEG-DRGF---FEIDQVNGEVRTTRTFNENSKA 636

  Fly   672 QYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRH----YIYSLAD------------- 719
            .||:.|:|.|.| .|..||:|.|.:.::...|........:    :|.:|..             
  Rat   637 SYELIVVAHDHG-KTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVA 700

  Fly   720 -----DDDDIK-----------------LKKEVEKERILLH-VTASDKDDGDNALIEYRLESGGE 761
                 |:.:|:                 :|.:..|   .|| ::.|...:..:...|.:      
  Rat   701 IKCKRDNKEIRTYNCSNCLTITCLLGCFIKGQNSK---CLHCISVSPISEEQDKKAEEK------ 756

  Fly   762 GLFQLDARSGAISLRGDAPASMHW----KPHYKLLVSARD------------------------- 797
                       :||||...|...:    |...|..:|..|                         
  Rat   757 -----------VSLRGKRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSS 810

  Fly   798 ------------AGQRRS-------------------------------QQDAIVE--------- 810
                        .|.|||                               |.|.|:.         
  Rat   811 LNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTTANHIYHHSFNSQGPQQPDLIINGVPLPETEN 875

  Fly   811 --------------IVLKSKLEMLECGQAQAGGYE--FQMVEDHEQQRNSQPNREVGIVQVKSTN 859
                          |...|..:.||....:..|:|  .|...:|:.||:...:..|..|...|..
  Rat   876 YSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVT 940

  Fly   860 GKANSHIEYDIIQGDRA-QNFRIDTRSGRITTAR-PL-DREEQANYRLTILASSSSSSSAAASSV 921
            ...:...::|...|... :..||...|.|....| |: .|.:...:...|:|.|..::  ||...
  Rat   941 SMGSHMPDHDQNDGFHCREECRILGHSDRCWMPRNPMPTRSKSPEHMRNIIALSIEAT--AADVE 1003

  Fly   922 SYGQCIVNIAIIDLNDNAP------VFALDRESEP---------------TISLPE-NAAVGQEI 964
            :|..|            .|      .|..|..|.|               ||..|: |:|:    
  Rat  1004 AYDDC------------GPTKRTFATFGKDVSSHPAEERSILKGKRTVDVTICSPKVNSAI---- 1052

  Fly   965 YLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTGVLYLQRPIRAEPGSLIHVELMATDAGSPP 1028
                   |:||             |....|.|||..|:|:.|:..:|      .:..|.|.:||
  Rat  1053 -------REAG-------------NGCEAISPVTSPLHLKSPLPTKP------SMSYTVALAPP 1090

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 22/98 (22%)
Cadherin_repeat 163..266 CDD:206637 35/102 (34%)
Cadherin_repeat 275..378 CDD:206637 33/107 (31%)
Cadherin_repeat 393..490 CDD:206637 39/96 (41%)
Cadherin_repeat 498..594 CDD:206637 27/100 (27%)
Cadherin_repeat 603..704 CDD:206637 29/116 (25%)
Cadherin_repeat 735..814 CDD:206637 21/174 (12%)
Cadherin 843..>907 CDD:394985 12/66 (18%)
Cadherin 950..1026 CDD:394985 20/91 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdh19XP_006257284.1 Cadherin_2 27..106 CDD:462413 17/78 (22%)
Cadherin_repeat 133..234 CDD:206637 36/105 (34%)
Cadherin_repeat 242..342 CDD:206637 33/108 (31%)
Cadherin_repeat 356..449 CDD:206637 39/95 (41%)
Cadherin_repeat 458..559 CDD:206637 28/100 (28%)
Cadherin_repeat 574..662 CDD:206637 26/92 (28%)
Blue background indicates that the domain is not in the aligned region.

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