DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdhga5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001032214.1 Gene:Pcdhga5 / 291637 RGDID:1311949 Length:932 Species:Rattus norvegicus


Alignment Length:1093 Identity:276/1093 - (25%)
Similarity:439/1093 - (40%) Gaps:284/1093 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LLLFFLLLAGRESLCQTGDTKLELLAPRGRSYATTYEQYAAFPRRRSSSSSPSGEMQSRAVDTSA 69
            ||.||:||.   :||..|:.::.                                          
  Rat    13 LLTFFMLLG---TLCAPGNGQIR------------------------------------------ 32

  Fly    70 DFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPRE----------------FTLDPVTGEVKTNVVL 118
             :.|.|...:|:.||.|      |......|||                |:|:|..|.:.|...:
  Rat    33 -YSVREELDKGSFVGNI------SKDLGLEPRELAERGVRIISRGRSQLFSLNPRGGSLVTAGRI 90

  Fly   119 DREGMRDH-------YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLL 176
            |||.:...       ::::|.:....|  ||.::|||:|||.|.|.:..:.:..:|:|.:||||:
  Rat    91 DREELCAQSAPCLISFNILVENKMKIY--EVEVEVLDINDNFPRFRDEELKVKVNENAAAGTRLV 153

  Fly   177 LDAATDADVGENGVTDQYEIVAGNVDNKFRLVTTANP-------SGDTSYLHLETT--GNLDRES 232
            |..|.|.|||.|.: ..|::             :|||       ||.....|.|..  ..||||.
  Rat   154 LPFARDGDVGVNSL-QGYQL-------------SANPHFSLDVKSGSDGQKHPELVLEQPLDREK 204

  Fly   233 RGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDN 297
            ..:..|.::|.|||:|.....:.::||:||.|||.|:|..|:|.|::.|....||.::.:.|:|.
  Rat   205 ESALDLVLTALDGGNPVHSSTVHISVTVLDANDNAPLFTQSEYRVNVPENTPVGTRLLILTATDA 269

  Fly   298 DLGDNSKITYYLAETEHQ----FTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHG 358
            |.|.|:|:|:.....|.:    |.::...|.|||.:.::..:.:         ..:..|.|:|.|
  Rat   270 DEGINAKLTFSFRNEEDKISETFQLDSNLGEISTIQSLDYEESS---------FYLMEVVAQDGG 325

  Fly   359 SPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTS 423
            :.....:..|||.  |.||:.|.:...     ...::|.|:.:.||::|..:|.|:|||.||..|
  Rat   326 ALLASAKVLVTVQ--DVNDNAPEVILT-----SLTSSVSEDCLPGTIIALFSVHDADSGENGEVS 383

  Fly   424 VRIVSGNELGHFRLEEAAD--LHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVND 486
            ..|.....   |:||::.:  .|:: ....|||||...||:||..:|:|||..:|..|:.:.|.|
  Rat   384 CSIPKNLP---FKLEKSVNNYYHLL-TTSALDREETSDYNITVTVVDRGTPPLSTENHISLKVAD 444

  Fly   487 VNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDI--LSGNEL---KWFSMDP 546
            :||:.|.|.:..||..:||..|.|..:.|:.|.|.|:|.||::.|.:  .:..|:   .:.|::.
  Rat   445 INDNPPTFSRPSYSTSISENNPRGVSIFSVNAYDADSGDNARITYSLAEYTFQEVPVSSYVSINS 509

  Fly   547 LTGLIVTTGPLDRE-IRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQF------SQREQ 604
            .||::......|.| :|| ::|.::|:|.|..|..:...|.:.:||:||..|:.      :....
  Rat   510 DTGVLYALQSFDYEHLRD-LQLLVTAKDSGNPPLSSNASLSLFVLDQNDNTPEILYPAIPTDGST 573

  Fly   605 NVTLG-EDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRP-LDR 667
            .|.|. ..|.|..:|..:.|.|.|.|.|..:::.|..:.|   |..|::...||::.|.|. |||
  Rat   574 GVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE---PGLFSIGLHTGEVCTARALLDR 635

  Fly   668 EKMSQYEISVIARDQGAPTPQSATATVWLNVADV---------NDNDPQFYPRHYIYSLADDDDD 723
            :...| .:.|..:|.|.| |.|||.|:.:.|.|.         |.|.|          ....|.|
  Rat   636 DVPKQ-SLVVAVQDHGQP-PLSATVTLTIAVGDSIPDVLTDLGNHNTP----------AEPQDSD 688

  Fly   724 IKLKKEV------------------------EKERILLHVTASDKDDGDNALIEYRLES------ 758
            :.|...|                        ...|:|...|.             ||.|      
  Rat   689 LTLYLVVSVAVVSCVFLGFVTVLLALRLRHWHMSRLLQTSTG-------------RLASMPASHF 740

  Fly   759 -GGEGL-FQLDARSGAISLRGDAPAS--MHWKPHY-KLLVSARDAGQRRSQQDAIVEIVLKSKLE 818
             |.:|: ..|...|..|||..|:..|  :..:|:| ..|:|....  .:|:...|.:.:..||.|
  Rat   741 VGMDGVQAYLQTYSHEISLTTDSKKSHLIFPQPNYADRLISEESC--EKSEPLLIPDNIHTSKEE 803

  Fly   819 MLECGQAQAGGYEFQMVEDHEQQRNSQPNREVGIVQVK--STNGKANSHIEYDIIQGDRAQNFRI 881
            .   |.||                .:.||.:....|.:  .|:|..|         ||.      
  Rat   804 P---GAAQ----------------QAPPNTDWRFSQAQRPGTSGSQN---------GDE------ 834

  Fly   882 DTRSGRITTARPLDREEQANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDR 946
                   |...|.::.:....:..||||:|.::..:::               |........|..
  Rat   835 -------TGTWPNNQFDTEMLQAMILASASEAADGSST---------------LGGGTGTMGLSA 877

  Fly   947 ESEPTISLPENAAVGQEIYLSRVRDRDAGVNSRISYSLTNNPNQQFRIGPVTG 999
            ...|..:|.......|.:|:       .|.|:    :|||...::....|..|
  Rat   878 RYGPQFTLQHVPDYRQNVYI-------PGSNA----TLTNAAGKRDGKAPAGG 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 26/103 (25%)
Cadherin_repeat 163..266 CDD:206637 36/111 (32%)
Cadherin_repeat 275..378 CDD:206637 27/106 (25%)
Cadherin_repeat 393..490 CDD:206637 36/98 (37%)
Cadherin_repeat 498..594 CDD:206637 30/101 (30%)
Cadherin_repeat 603..704 CDD:206637 34/111 (31%)
Cadherin_repeat 735..814 CDD:206637 20/89 (22%)
Cadherin 843..>907 CDD:394985 10/65 (15%)
Cadherin 950..1026 CDD:394985 11/50 (22%)
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdhga5NP_001032214.1 Cadherin_2 30..112 CDD:462413 19/130 (15%)
Cadherin_repeat 137..238 CDD:206637 36/114 (32%)
Cadherin_repeat 246..343 CDD:206637 27/107 (25%)
Cadherin_repeat 355..448 CDD:206637 36/96 (38%)
Cadherin_repeat 456..558 CDD:206637 31/102 (30%)
Cadherin_repeat 579..666 CDD:206637 30/91 (33%)
Cadherin_C_2 688..772 CDD:465139 18/96 (19%)
Cadherin_tail 811..>905 CDD:435046 23/141 (16%)
Blue background indicates that the domain is not in the aligned region.

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