DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Cdh9

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001162101.1 Gene:Cdh9 / 29163 RGDID:1308343 Length:788 Species:Rattus norvegicus


Alignment Length:726 Identity:186/726 - (25%)
Similarity:293/726 - (40%) Gaps:187/726 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1825 DTPFVYNVSEDLQIGHTISTLRAHDPDTLGSVTFLLM-DGHDGKFLLEPSTGKLILNDTLDRETK 1888
            ||.:|..:..|...|.             |::.::|. ||....|:::.:||.:.....||||.|
  Rat    69 DTQYVGKLHTDQDKGD-------------GNLKYILTGDGAGNLFVIDENTGDIHAAKKLDREEK 120

  Fly  1889 SKYELRIRVSD---GVQY-TEAYATIQVSDTNDNPPLFEDTVYSFDIPENAQRGYQVGQIVARDA 1949
            |.|.||.:..|   |.|. .|:...|::.|.|||.|.|...:|:..:||.:..|..|.|:.|.||
  Rat   121 SLYILRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDA 185

  Fly  1950 D---LGQNAQLSYGVVSDWANDVFSLNPQTGML-TLTARLDYEEVQHYILIVQAQDNG--QPSLS 2008
            |   .|.:|::.|.::.  ....||::|::|:: |....:..|..:.|.:::||:|.|  ...||
  Rat   186 DDANYGNSAKVVYSILQ--GQPYFSVDPESGIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLS 248

  Fly  2009 TTITVYCNVLDLNDNAPIFDPMSYSSEVFENVPIATEVVTVSAKDIDSGNNGLIEYSITAGDVDS 2073
            .|.||...:.|:|:|.|.|...:|.....|:.|:.|.:..:.|.|.|:|.|..:||||:.|:...
  Rat   249 GTTTVNITLTDVNNNPPRFPQSTYQFNSLESAPLGTHLGRIKANDPDTGENAELEYSISEGEGSD 313

  Fly  2074 EFGI-----DSNGTIRTRRNLDREHRSTYTLTVTARDCADEFASFSELEETQLKLKYRSPRKYQQ 2133
            .|.:     ...|.|..::|||.|.:..|||.|.|.:                  .:..||    
  Rat   314 MFDVITDKDTQEGIITVKQNLDFEKKMLYTLRVDASN------------------THPDPR---- 356

  Fly  2134 TRQEFLAHQKQQRLSSTVKVTILIKDVNDEVPVFISANE-TAIMENVAINTVVIAVKAVDNDEGR 2197
                || |....:.|:.||::  ::|| ||.|||...:. ..:.|:|...:::..|.|.|.| ..
  Rat   357 ----FL-HLGPFKDSAMVKIS--VEDV-DEPPVFSKLSYLMEVDEDVKEGSIIGQVTAYDPD-AM 412

  Fly  2198 NGYIDYLMKEARDEDMGQSDPLPFSLNPTDGQLRVVDALDRELRSSYLLNITARDRGEPPQSTES 2262
            |..|.|.:....|.|.      .||::..:|.:..:..||||....:.:.:||.:...|.||::.
  Rat   413 NNIIKYSVDRHTDMDR------VFSIHSENGSIFTLKPLDRESSPWHNITVTATEINNPKQSSQI 471

  Fly  2263 QLLIRILDENDNSPVFDPKQYSASVAENASIGAMVLQVSATDVDEGANGRIRYSIVLGD--QNHD 2325
            .:.|||||.||::|.| ...|...|.|||..|.::..:|..|.|:...|...:...:.:  .|.:
  Rat   472 AVFIRILDINDHAPEF-AMYYETFVCENAKSGQLIQTISVMDKDDPPRGHKFFFEPVPEFPLNPN 535

  Fly  2326 FSISED----TGVVRVAKNLNYERLSRY------------------SLTVRAEDCALEN------ 2362
            |:|.::    .|::......:..:::.|                  :||:|.  ||.:|      
  Rat   536 FTIVDNKDNTAGIITRKDGYSRNKMNTYLLPVLIFDNDYPIQSSTGTLTIRV--CACDNQGNMQS 598

  Fly  2363 --------PAGDTAELTINIL------------------------------DINDNRPTFLDSPY 2389
                    .||.:....|.||                              |:.||..|:.|   
  Rat   599 CNAEALMLAAGLSTGALIAILLCVVILLTLIVLFAALKRQRKKEPLIISKDDVRDNIVTYND--- 660

  Fly  2390 LARVMENTVPPNGGYVLTVNAYDAD---------------------------TPPL--NSQVRYF 2425
                       .||......|:|..                           |.||  |..|:.|
  Rat   661 -----------EGGGEEDTQAFDIGTLRNPEAREDSKLRRDVMPETIFQIRRTVPLWENIDVQDF 714

  Fly  2426 ----LKEGDSD 2432
                |||.|||
  Rat   715 IHRRLKENDSD 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637 26/95 (27%)
Cadherin_repeat 1926..2023 CDD:206637 31/102 (30%)
Cadherin_repeat 2031..2162 CDD:206637 36/135 (27%)
Cadherin_repeat 2172..2274 CDD:206637 29/102 (28%)
Cadherin_repeat 2282..2380 CDD:206637 27/165 (16%)
Cadherin_repeat 2388..2487 CDD:206637 16/78 (21%)
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Cdh9NP_001162101.1 Cadherin_repeat 71..154 CDD:206637 26/95 (27%)
Cadherin_repeat 163..263 CDD:206637 31/101 (31%)
Cadherin_repeat 271..378 CDD:206637 36/136 (26%)
Cadherin_repeat 386..483 CDD:206637 29/103 (28%)
Cadherin_repeat 491..588 CDD:206637 18/98 (18%)
CADH_Y-type_LIR 722..781 CDD:460041 3/4 (75%)
Blue background indicates that the domain is not in the aligned region.

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