DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdh17

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:XP_006518968.1 Gene:Pcdh17 / 219228 MGIID:2684924 Length:1185 Species:Mus musculus


Alignment Length:1340 Identity:308/1340 - (22%)
Similarity:477/1340 - (35%) Gaps:423/1340 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 DFEVLEGQPRGTTVGFI-------PTKP------------KFSYRF--NEPPREFTLDPVTGEVK 113
            ::.|.|.|..||.:|.|       |..|            ..|||.  |..|....:|..:|.:.
Mouse    22 NYSVPEEQGAGTVIGNIGKDARLQPGLPPAERGSGSGRSKSGSYRVLENSAPHLLDVDADSGLLY 86

  Fly   114 TNVVLDREGMRDH-----YDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGT 173
            |...:|||.:..|     ..|.|.::.....: :::::.|:|||:|.||...|.:..||:|..||
Mouse    87 TKQRIDRESLCRHNAKCQLSLEVFANDKEICM-IKVEIQDINDNAPSFPSDQIEMDISENAAPGT 150

  Fly   174 RLLLDAATDADVGENGV------TDQYEIVAGNVDNKFRLVTTANPSGD-TSYLHLETTGNLDRE 231
            |..|.:|.|.|.||||:      .|.:.:.|.:|.::          || |.:..|.....||||
Mouse   151 RFPLTSAHDPDAGENGLRTYLLTRDDHGLFALDVKSR----------GDGTKFPELVIQKALDRE 205

  Fly   232 SRGSYQLNISARDGGSPPRFGYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASD 296
            .:..:.|.::|.|||.|||...:|:||.::|.|||.|:|:...|.|.|.|.|..||.|:.:.|:|
Mouse   206 LQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATD 270

  Fly   297 NDLGDNSKITY----YLAETEHQ-FTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARD 356
            .|.|.|.::.|    |:.:...: |:::|:||:|.....::..:...::         ..|.|||
Mouse   271 ADEGPNGEVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLE---------IDVQARD 326

  Fly   357 HGSPRQDGRTYVTVNLLDTNDHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGR 421
            .|.........|||.|:|.||:.|.|.|.....|    .:.|.|..|||:|.|.|.|.|||.||:
Mouse   327 LGPNPIPAHCKVTVKLIDRNDNAPSIGFVSVRQG----ALSEAAPPGTVIALVRVTDRDSGKNGQ 387

  Fly   422 TSVRIVSGNELG---------HFRLEEAAD-LHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTT 476
            ...|::.|...|         .|:|||..| .:.|..:..||||...:||:|:||.|.|:|...:
Mouse   388 LQCRVLGGGGTGGGLGGPGSVPFKLEENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSPPLNS 452

  Fly   477 TAHLIIDVNDVNDHEPVFEKSEYSAVLSELAPTGSFVASITATDEDTGVNAQVHYDILSGNELKW 541
            |....:.:.|.||:.|.|.|..|...:.|....|.::.|:.|.|.|.|.|..|.|.||..:    
Mouse   453 TKSFAVKILDENDNPPRFTKGLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSH---- 513

  Fly   542 FSMDPLTGLIVTTGPLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNV 606
                               |.|   :||            ||.:.|                   
Mouse   514 -------------------IGD---VSI------------YTYVSV------------------- 525

  Fly   607 TLGEDAPPQTIVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPLDREKMS 671
                                 ..|||::               :||          |..:.|:..
Mouse   526 ---------------------NPTNGAI---------------YAL----------RSFNYEQTK 544

  Fly   672 QYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLADDDDDIKLKKEVEKERIL 736
            .:|..|:|:|.|||....:.|||.:.|.|||||.|..    .:.:|.:|..::::.:......::
Mouse   545 AFEFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVI----VLPTLQNDTAELQVPRNAGLGYLV 605

  Fly   737 LHVTASDKDDGDNALIEYRLESGGEG-LFQLDARSGAI--------------------------- 773
            ..|.|.|.|.|::..:.|.:..|.:. ||::|..||.|                           
Mouse   606 STVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPT 670

  Fly   774 ----------SLRGDAPASM--------HWKPHYKLLVSARD------AGQRRSQQDAIVEIVLK 814
                      |:.|..|..:        ||.....|:|:...      |        |::.|.:|
Mouse   671 LSAVAKLIIRSVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISIILLA--------AMITIAVK 727

  Fly   815 SKLE----------MLECGQAQAGG----------YEFQMVEDHEQQRNSQPNREVGIVQVKSTN 859
            .|.|          :.|....|.||          .:..:|:...::||:     :.::.|.|:.
Mouse   728 CKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNA-----MNVMNVVSSP 787

  Fly   860 GKANSHIEYDI-----IQGDRAQNFRIDTRSGRITTARPLDREEQANYRLTILASSSSSSSAAAS 919
            ..|.|.:.:|.     :...|::...:...|..:|..     :..|....:.....::||...|:
Mouse   788 SLATSPMYFDYQTRLPLSSPRSEVMYLKPASNNLTVP-----QGHAGCHTSFTGQGTNSSETPAT 847

  Fly   920 SVSYGQCIVNIAIIDLNDNAPV----------FALDRESEPTISLPENAAVGQEIYLSRVRDRDA 974
            .:|..|          .||.|.          |.   :|..|...||.|::           ||:
Mouse   848 RMSIIQ----------TDNFPAEPNYMGSRQQFV---QSSSTFKDPERASL-----------RDS 888

  Fly   975 GVNSRISYSLTNNPNQQFRIGPVTGVLYLQRPIRAEPGSLIH------VELMATDAGSPPLSSKL 1033
            |...........:.|:                     ||...      :::..|...|.||....
Mouse   889 GHGDSDQADSDQDTNK---------------------GSCCDMSVREALKMKTTSTKSQPLEQAF 932

  Fly  1034 SLSVLIADVNDHTPVFDHTSYETSLPETTKVNTRFFALAATDIDLGDNGRISYEIIEGNTERMFG 1098
            ...:..|.:..||                 :.||   |.:.|                       
Mouse   933 PTLLSFAILTLHT-----------------ITTR---LQSVD----------------------- 954

  Fly  1099 VFPDGYLFVRAPLDREERDYYALTVSCRDAGQPSRSSV--VPVVIHVIDENDNAPQFTNSTFTFS 1161
                       ||..|..:....|..||..|...|..:  .|..    ::.:||...|| .|..:
Mouse   955 -----------PLPPEPEECINCTDECRVLGHSDRCWMPQFPAA----NQAENADYRTN-LFVPT 1003

  Fly  1162 IPENAPADTF-----VGKLTAVDRDIGRNAELSFTLSSQTQDFTIDTRN--GFIK---TLRPFDR 1216
            :..|...:|:     .||.|..            |.....::.||...|  .::|   .|.|..:
Mouse  1004 VEANVETETYETVNPTGKKTFC------------TFGKDKREHTILIANVKPYLKAKRALSPLLQ 1056

  Fly  1217 EALVKVSRNAEA-----SGEDGSLRGSMAGNYMLLEATVS 1251
            |.....|...:|     :...|||.|..|....|.||:.|
Mouse  1057 EVPSASSSPTKACIEPCASTKGSLDGCEAKPGPLAEASSS 1096

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 25/106 (24%)
Cadherin_repeat 163..266 CDD:206637 38/109 (35%)
Cadherin_repeat 275..378 CDD:206637 31/107 (29%)
Cadherin_repeat 393..490 CDD:206637 38/106 (36%)
Cadherin_repeat 498..594 CDD:206637 20/95 (21%)
Cadherin_repeat 603..704 CDD:206637 21/100 (21%)
Cadherin_repeat 735..814 CDD:206637 23/130 (18%)
Cadherin 843..>907 CDD:394985 10/68 (15%)
Cadherin 950..1026 CDD:394985 11/81 (14%)
Cadherin_repeat 1053..1149 CDD:206637 13/97 (13%)
Cadherin_repeat 1157..1274 CDD:206637 25/110 (23%)
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdh17XP_006518968.1 Cadherin_2 21..113 CDD:462413 23/90 (26%)
Cadherin_repeat 142..240 CDD:206637 38/107 (36%)
Cadherin_repeat 248..348 CDD:206637 31/108 (29%)
Cadherin_repeat 362..466 CDD:206637 38/103 (37%)
Cadherin_repeat 475..577 CDD:206637 41/204 (20%)
Cadherin_repeat 592..680 CDD:206637 13/87 (15%)
Blue background indicates that the domain is not in the aligned region.

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