DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and cdh-5

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_001343640.1 Gene:cdh-5 / 177671 WormBaseID:WBGene00000397 Length:1449 Species:Caenorhabditis elegans


Alignment Length:1393 Identity:323/1393 - (23%)
Similarity:515/1393 - (36%) Gaps:416/1393 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1478 LVVDDNDNPPIFPSTAIVRQIKEGIPLKTPIVTVTADDPDSGLNGKVSYAISKQEPQLPQGRHFG 1542
            ::|:|.|..|..| .|..:.|..|:.     .|:.|.|.    .|.|...:.|.:...|....:.
 Worm    18 ILVNDEDLQPGMP-PATYQYILTGLG-----ATIFAVDQ----RGFVYLNVPKIDADPPNPSTYQ 72

  Fly  1543 INTETGVIHTLREIDRESIDTFRLTVVATDRAQPSERQLSTEKLVTVIVEDINDNAPVFVSMNAA 1607
            :|.|...::|                |.|.|::|        ..:|:.:.|||||:|.|..    
 Worm    73 LNVEAREVNT----------------VPTRRSEP--------VTITIHILDINDNSPQFEQ---- 109

  Fly  1608 ILPPKF---STSKGSSTAVMQVHAKDADSSSNGLVTY---EIVSGPQELFKLQRNTGIITFT--- 1663
               |.:   :|:.|....|::|.|.|.||.:.|.|||   ::.:|.::.|:.:..|.::..|   
 Worm   110 ---PIYMANTTASGDERDVVKVVATDVDSGAFGQVTYTIAQVTNGGEDKFRYETATNMLVATGNL 171

  Fly  1664 -PGPQFKQEVRYQLTLKSTDEAVQSERRSSEVYITII---------------------------- 1699
             ||.      |||:.:    ||:....|||:..:.::                            
 Worm   172 VPGE------RYQVVI----EAIDGGGRSSQAIVIVLALDPMHQTFSSLAPLPGMETFMPNPLAM 226

  Fly  1700 --TPG----SGGSESSVPQFEQRSKLSGSVYENEPIGTSILTVTAHLASAEIEYFVTNVTATGSR 1758
              |||    |..||.::..|..      .|.||.|..|.:::: ...:|.|:.||  ||......
 Worm   227 ATTPGTMVTSAESEETIQTFVT------EVNENTPPNTVVVSL-GDESSRELTYF--NVVGGNEE 282

  Fly  1759 GQVDRLFDIDAKLGILSTAAELDREAGPEEYEVEVYAIALGGQPRTSR-----TKVRVTVLDKND 1818
            |:    |.|| ..|.:.||.|||||      :..:|::.:..:.|...     |.|:|||:|.||
 Worm   283 GK----FAID-DAGTIVTAEELDRE------KTAMYSLQVETRSRNPDQHLYWTLVQVTVMDVND 336

  Fly  1819 SPPQFLD-TPFVYNVSEDLQIGHTISTLRAHDPDTLGSVTFLLMDGHDGKFLLEPSTGKLILNDT 1882
            :.|.|.| .|....:|.|                             |    :|..||.:|    
 Worm   337 NAPTFTDPQPIRLRLSID-----------------------------D----IEQLTGNMI---- 364

  Fly  1883 LDRETKSKYELRIRVSDGVQYTEAYATIQVSDTNDNPPLFEDTVYSFDIPENAQRGYQVGQIVAR 1947
                                                                      :|:|...
 Worm   365 ----------------------------------------------------------IGRIGVE 371

  Fly  1948 DADLGQNAQLSYGVVSDWANDVFSLNPQTGMLTLTARLDYEEVQHYILIVQAQDNGQPSLST--- 2009
            |||...|.:|...::.. .|.:|::: ..|:|::...........:.|.|.|:|:|:|||.|   
 Worm   372 DADADDNGRLELRIMPP-HNKLFAIS-NDGILSVNGDFTAAHFGEHDLTVVARDHGEPSLETRAR 434

  Fly  2010 -TITVYCNVLDLNDNAPIFDPMSYSSEVFENVPIAT------EVVTVSAKDIDSGNNGLI----- 2062
             .|:::..::.:...||..:...|:|.| |..|..|      :.||.|....:..:..:.     
 Worm   435 VQISIFGTLITMATVAPTNEVFEYTSSV-EEEPQTTNPDEHLQTVTTSPSTKNQVSQQIFSSFPA 498

  Fly  2063 -EYSITAGDVDSEF-------GIDSNGTIRTRRNLDREHRSTY--------TLTVTARDCADEFA 2111
             :...|...|:.||       .:..:..|......|.|....|        |:|| |.|.::|:.
 Worm   499 PQVEQTGAPVEPEFPQFPTFPTLSPHPQIDEETEEDEEVTDEYPDTVATVPTVTV-APDYSEEYG 562

  Fly  2112 SFSELEETQLKLKYRSPRKYQQTRQEFLAHQKQQRLSSTVKVTIL-----IKDVNDEVPVFISAN 2171
                                          |:....|||:...:.     |.::..|.|  |:..
 Worm   563 ------------------------------QEASSSSSTILPDVQGVWSEISELPSENP--ITYT 595

  Fly  2172 ETAIMENV--AINTVVIAVKAVDNDEGRNGYIDYLMKEARDEDMGQSDPLPFSLNPTDGQLRVVD 2234
            |:.|.|:.  |..|.......:..:.|.:...:....|...|::.:         ||:       
 Worm   596 ESPITESTAPAPETSPETAPEITPERGSSAENELYPTEIAPENVEK---------PTE------- 644

  Fly  2235 ALDRELRSSYLLNITARDRGEPPQSTESQLLIRILDENDN------------------------- 2274
                          .|.|..|..::||:|.|..:::.:..                         
 Worm   645 --------------LAPDLSETTENTENQWLPDVVETSQELPSLPTTKMAPPQPVPTQSPPLPTP 695

  Fly  2275 ---SPVFDPKQYSASVAENASIGAMVLQVSATDV----DEGANGRIRYSIVLGDQNHDFSISEDT 2332
               :|||.|.|.:..:.||.|      ||..|..    .:|.:|.|.|.:..||.:. ||:|..:
 Worm   696 KRLAPVFKPSQITVQIDENES------QVEITKAHATYPDGLSGTITYVLHKGDPSL-FSVSSYS 753

  Fly  2333 GVVRVAKNLNYERLSRYSL---TVRAEDCALENPAGDTAELTINILDINDNRPTFLDSPYLARVM 2394
            |.|.:.:.|:.|..|..::   |..|:...::........:|||:.|.||..|.|..:.|...|.
 Worm   754 GSVNLLRALDAETNSTVTIQISTSEAQTLEVDPKLAHFVSITINVADKNDWIPNFESASYEFDVK 818

  Fly  2395 ENTVPPNGGYVLTVNAYDADTPPLNSQVRY-FLKEGDSDL-FRINASSGDIALLKPLDREQQSEY 2457
            |:|:|  |..|..|||:|.|....|:::|| .|..|..:. |.:||.||.|.|.:|:|.....:.
 Worm   819 EDTLP--GTIVGQVNAFDQDRDEPNNRIRYRLLSAGGLEAHFNVNAESGLITLARPIDAFAGEKI 881

  Fly  2458 TLTLVAMDTGSPPLTGTGIVRVEV-----QDINDNDPV----------FELQSYHATVRENL--P 2505
            ||.:...|:|..||:.|..|.:.|     ..|.|..||          |.|::|.|:|.|.:  |
 Worm   882 TLRIEGADSGMLPLSSTTTVLINVVATSSHLIPDASPVSNTPNEGELQFSLRNYTASVSEAVRPP 946

  Fly  2506 SGTHVLT--PRATDKDEGLNAKLRF---NLL-GEHMHRFHIDSETG---EISTATTLDREETSVY 2561
            ....||:  .:.||        .||   |:: |.:...|.|.:...   |:.|...||||....|
 Worm   947 HLVQVLSVMNKPTD--------TRFIICNIISGNYRGAFGITAGNDGNCELRTQMELDRETVERY 1003

  Fly  2562 HLTLMAQDSSITEPRASSVNLTISVSDVNDNIPKF--DS----TTYNVAVPERISKGEFVFGARA 2620
            .|.:.....:.|:    ...::|:|.|||||:|:|  ||    |||..||....:....|...:|
 Worm  1004 LLNITVTAGAQTD----YALVSITVLDVNDNVPRFVYDSDLGLTTYFGAVSSVANAFTRVLTVKA 1064

  Fly  2621 LDLDDGENAVVHYTISGRDQH--YFDINTKTGVVSTKLELKTKTKSHDDLTYTIVISAMDQ--GE 2681
            .|.|.|.:::|:|.:.....|  ||.| :..|.:|||..:.|....:....:...:||.|.  ..
 Worm  1065 EDADLGNSSLVNYALDPLSAHSKYFSI-SPFGEISTKQSMSTILSRNRLQFFEFRVSACDSPISG 1128

  Fly  2682 QSLSSKAELTV-ILRPPELFPTFAYMAN 2708
            |.|.|||::.| ::.....|....|..|
 Worm  1129 QQLCSKADVVVNVIGSTNRFKMIIYGLN 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637
Cadherin_repeat 163..266 CDD:206637
Cadherin_repeat 275..378 CDD:206637
Cadherin_repeat 393..490 CDD:206637
Cadherin_repeat 498..594 CDD:206637
Cadherin_repeat 603..704 CDD:206637
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637 2/6 (33%)
Cadherin_repeat 1497..1597 CDD:206637 20/99 (20%)
Cadherin_repeat 1621..1699 CDD:206637 24/84 (29%)
Cadherin_repeat 1720..1818 CDD:206637 31/102 (30%)
Cadherin_repeat 1827..1918 CDD:206637 8/90 (9%)
Cadherin_repeat 1926..2023 CDD:206637 21/100 (21%)
Cadherin_repeat 2031..2162 CDD:206637 28/162 (17%)
Cadherin_repeat 2172..2274 CDD:206637 17/103 (17%)
Cadherin_repeat 2282..2380 CDD:206637 28/104 (27%)
Cadherin_repeat 2388..2487 CDD:206637 36/105 (34%)
Cadherin_repeat 2495..2592 CDD:206637 29/107 (27%)
Cadherin_repeat 2600..2694 CDD:206637 29/98 (30%)
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
cdh-5NP_001343640.1 Cadherin_repeat 4..103 CDD:206637 26/118 (22%)
Cadherin_repeat 125..201 CDD:206637 24/85 (28%)
Cadherin_repeat 245..337 CDD:206637 33/111 (30%)
Cadherin_repeat 364..439 CDD:206637 22/138 (16%)
Atrophin-1 461..>753 CDD:460830 66/362 (18%)
Cadherin_repeat 706..803 CDD:206637 27/103 (26%)
Cadherin_repeat 812..906 CDD:206637 34/95 (36%)
Cadherin_repeat 935..1030 CDD:206637 29/106 (27%)
Cadherin_repeat 1044..1142 CDD:206637 29/98 (30%)
Blue background indicates that the domain is not in the aligned region.

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