DRSC/TRiP Functional Genomics Resources

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Protein Alignment ft and Pcdha6

DIOPT Version :10

Sequence 1:NP_477497.1 Gene:ft / 33627 FlyBaseID:FBgn0001075 Length:5147 Species:Drosophila melanogaster
Sequence 2:NP_031793.2 Gene:Pcdha6 / 12937 MGIID:1298367 Length:946 Species:Mus musculus


Alignment Length:744 Identity:213/744 - (28%)
Similarity:327/744 - (43%) Gaps:117/744 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RLLLLFFLLLAGRESLCQTGDTKLELLAPRGRSYATTYEQYAAFPRRRSSSSSPSGEMQSRAVDT 67
            |.:||..||||..|:    |..:|....|....:.|...:.|                      .
Mouse    12 RCMLLSLLLLAAWEA----GSGQLHYSVPEEAKHGTFVGRIA----------------------Q 50

  Fly    68 SADFEVLEGQPRGTTVGFIPTKPKFSYRFNEPPR----EFTLDPVTGEVKTNVVLDREGM----- 123
            ....|:.|..||             .:|.....|    |..|.  .|.:..|..:|||.:     
Mouse    51 DLGLELTELVPR-------------LFRVASKDRGDLLEVNLQ--NGILFVNSRIDREELCGRSV 100

  Fly   124 --RDHYDLVVLSSQPTYPIEVRIKVLDVNDNSPEFPEPSIAISFSESATSGTRLLLDAATDADVG 186
              ..|.:::|  .:|.....|.::|.|:|||.|.|......:...||....:...|:.|:|||||
Mouse   101 ECSIHLEVIV--DRPLQVFHVEVEVRDINDNPPVFSVKEQRMLIYESRLPDSLFPLEGASDADVG 163

  Fly   187 ENGVTDQYEIVAGNVDNKFRLVTTANPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGSPPRF 251
            .|.:. .|::   :....|.|...:|..|: ..:.|....:||||....::|.::|.|||.|...
Mouse   164 LNSML-TYKL---SPSEYFGLDVKSNSDGN-KQIRLLLKKSLDREDAPEHKLLLTATDGGKPELT 223

  Fly   252 GYLQVNVTILDVNDNPPIFDHSDYNVSLNETALPGTPVVTVMASDNDLGDNSKITYYL-----AE 311
            |.:|:.||:||||||.|.|.|.:|.|.:.|.:..||.|:.:.|||.|.|.||.|:|..     .:
Mouse   224 GSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNASDKDEGTNSAISYSFNRLVPPK 288

  Fly   312 TEHQFTVNPETGVISTTERVNCPQQTNVKSSASQKSCVFTVFARDHGSPRQDGRTYVTVNLLDTN 376
            |..||:::.:||.|.|...::..|....|         ..|.|.|.|.|...|...|.|.:||.|
Mouse   289 TLEQFSIDADTGEIITQGNLDFEQVDVYK---------IHVDATDKGHPPMVGHCTVLVKVLDEN 344

  Fly   377 DHDPIISFRFFPDGGKVATVDENAVNGTVVAAVAVKDSDSGLNGRTSVRIVSGNELGH--FRLEE 439
            |:.|.|:.....     ..|.|:|...||:|.::|.|.|||.||:.:..:..     |  |:|..
Mouse   345 DNVPQITLTSLS-----LPVREDAALSTVIALISVSDLDSGSNGQVTCSLSP-----HVPFKLVS 399

  Fly   440 A-ADLHIVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVL 503
            . .:.:.:.::..||||....|.:.|.|.|.|:|:..|||.:.::|.||||:.|.|.:.:|:..:
Mouse   400 TFKNYYSLVLDSALDRETTADYQVVVTARDGGSPSLWTTASVSVEVADVNDNAPSFAQPDYTVFV 464

  Fly   504 SELAPTGSFVASITATDEDTGVNAQVHYDILS---GNEL--KWFSMDPLTGLIVTTGPLDREIRD 563
            .|..|.|:.:.:::|.|.|...||.|.|.::.   |..|  .:.|:...:|.:....|||.|..:
Mouse   465 KENNPPGAHIFTVSAMDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELE 529

  Fly   564 TVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNVTLGEDAP-----------PQT- 616
            .::..:||||.|.....:...|:|.:|||||.||        ..||...|           |.. 
Mouse   530 LLQFQVSARDAGVPALGSNVTLQVFVLDENDNAP--------TLLGPWTPGSGGVVSELVSPSVG 586

  Fly   617 ---IVALMTATDHDQGTNGSVTFALAPSVERLYPLQFALDALTGQLTTRRPLDREKMSQYEISVI 678
               :|..:.|.|.|.|.|..:::.|.|.......| |.:...||:::|.|.|:.....::.:.|:
Mouse   587 AGQVVTKVRAVDADSGYNAWLSYELHPLAGGTRSL-FRVGLYTGEISTTRALEEADAPRHRLLVL 650

  Fly   679 ARDQGAPTPQSATATVWLNVADVNDNDPQ 707
            .:|.|.|. ..|||||.:::.: |...|:
Mouse   651 VKDHGEPA-LIATATVLVSLVE-NSQTPK 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ftNP_477497.1 Cadherin_repeat 71..152 CDD:206637 20/91 (22%)
Cadherin_repeat 163..266 CDD:206637 34/102 (33%)
Cadherin_repeat 275..378 CDD:206637 35/107 (33%)
Cadherin_repeat 393..490 CDD:206637 33/99 (33%)
Cadherin_repeat 498..594 CDD:206637 29/100 (29%)
Cadherin_repeat 603..704 CDD:206637 29/115 (25%)
Cadherin_repeat 735..814 CDD:206637
Cadherin 843..>907 CDD:394985
Cadherin 950..1026 CDD:394985
Cadherin_repeat 1053..1149 CDD:206637
Cadherin_repeat 1157..1274 CDD:206637
Cadherin_repeat 1282..1380 CDD:206637
Cadherin_repeat 1390..1485 CDD:206637
Cadherin_repeat 1497..1597 CDD:206637
Cadherin_repeat 1621..1699 CDD:206637
Cadherin_repeat 1720..1818 CDD:206637
Cadherin_repeat 1827..1918 CDD:206637
Cadherin_repeat 1926..2023 CDD:206637
Cadherin_repeat 2031..2162 CDD:206637
Cadherin_repeat 2172..2274 CDD:206637
Cadherin_repeat 2282..2380 CDD:206637
Cadherin_repeat 2388..2487 CDD:206637
Cadherin_repeat 2495..2592 CDD:206637
Cadherin_repeat 2600..2694 CDD:206637
Cadherin_repeat 2710..2806 CDD:206637
Cadherin_repeat 2814..2909 CDD:206637
Cadherin_repeat 2917..3009 CDD:206637
Cadherin 3018..3114 CDD:394985
Cadherin 3129..3220 CDD:394985
Cadherin_repeat 3233..3330 CDD:206637
Cadherin_repeat 3338..3434 CDD:206637
Cadherin_repeat 3443..3541 CDD:206637
Cadherin_repeat 3550..3647 CDD:206637
Cadherin_repeat 3657..3753 CDD:206637
EGF 4017..4047 CDD:394967
EGF_CA 4056..4090 CDD:238011
EGF_CA 4094..4128 CDD:238011
Laminin_G_1 4156..4306 CDD:395008
LamG 4428..4543 CDD:238058
Pcdha6NP_031793.2 Cadherin_2 30..111 CDD:462413 19/119 (16%)
Cadherin_repeat 142..238 CDD:206637 34/100 (34%)
Cadherin_repeat 246..346 CDD:206637 35/108 (32%)
Cadherin_repeat 354..451 CDD:206637 33/106 (31%)
Cadherin_repeat 460..561 CDD:206637 30/100 (30%)
Cadherin_repeat 581..670 CDD:206637 25/90 (28%)
Cadherin_C_2 694..769 CDD:465139
Cadherin_tail 796..912 CDD:435046
Blue background indicates that the domain is not in the aligned region.

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